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20062024
most citedA Realistic Model under which the Genetic Code is Optimal

20 citations · 62 across the 20 of their papers we have counts for

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14 papers · 1 filter

cs.DS2024

Total Completion Time Scheduling Under Scenarios

Thomas Bosman, Martijn van Ee, Ekin Ergen +4

Scheduling jobs with given processing times on identical parallel machines so as to minimize their total completion time is one of the most basic scheduling problems. We study inte…

cs.DS2022★ 1 cited

Elastic-Degenerate String Matching with 1 Error

Giulia Bernardini, Estéban Gabory, Solon P. Pissis +3

An elastic-degenerate string is a sequence of finite sets of strings of total length , introduced to represent a set of related DNA sequences, also known as a pangenome. The…

cs.DS2022★ 1 cited

A Universal Error Measure for Input Predictions Applied to Online Graph Problems

Giulia Bernardini, Alexander Lindermayr, Alberto Marchetti-Spaccamela +3

We introduce a novel measure for quantifying the error in input predictions. The error is based on a minimum-cost hyperedge cover in a suitably defined hypergraph and provides a ge…

cs.DS2020

String Sanitization Under Edit Distance: Improved and Generalized

Takuya Mieno, Solon P. Pissis, Leen Stougie +1

Let be a string of length over an alphabet , be a positive integer, and be a set of length- substrings of . The ETFS problem asks us to construct…

cs.DS2020

Maximum parsimony distance on phylogenetictrees: a linear kernel and constant factor approximation algorithm

Mark Jones, Steven Kelk, Leen Stougie

Maximum parsimony distance is a measure used to quantify the dissimilarity of two unrooted phylogenetic trees. It is NP-hard to compute, and very few positive algorithmic results a…

cs.DS2018★ 3 cited

Optimal Algorithms for Scheduling under Time-of-Use Tariffs

Lin Chen, Nicole Megow, Roman Rischke +2

We consider a natural generalization of classical scheduling problems in which using a time unit for processing a job causes some time-dependent cost which must be paid in addition…

cs.DS2018

A Duality Based 2-Approximation Algorithm for Maximum Agreement Forest

Neil Olver, Frans Schalekamp, Suzanne van der Ster +2

We give a 2-approximation algorithm for the Maximum Agreement Forest problem on two rooted binary trees. This NP-hard problem has been studied extensively in the past two decades,…

cs.DS2017★ 5 cited

A Fully Polynomial Time Approximation Scheme for Packing While Traveling

Frank Neumann, Sergey Polyakovskiy, Martin Skutella +2

Understanding the interactions between different combinatorial optimisation problems in real-world applications is a challenging task. Recently, the traveling thief problem (TTP),…

cs.DS2016★ 2 cited

On unrooted and root-uncertain variants of several well-known phylogenetic network problems

Leo van Iersel, Steven Kelk, Georgios Stamoulis +2

The hybridization number problem requires us to embed a set of binary rooted phylogenetic trees into a binary rooted phylogenetic network such that the number of nodes with indegre…

cs.DS2015★ 1 cited

A Duality Based 2-Approximation Algorithm for Maximum Agreement Forest

Frans Schalekamp, Anke van Zuylen, Suzanne van der Ster

We give a 2-approximation algorithm for the Maximum Agreement Forest problem on two rooted binary trees. This NP-hard problem has been studied extensively in the past two decades,…

cs.DS2014

Scheduling over Scenarios on Two Machines

Esteban Feuerstein, Alberto Marchetti-Spaccamela, Frans Schalekamp +4

We consider scheduling problems over scenarios where the goal is to find a single assignment of the jobs to the machines which performs well over all possible scenarios. Each scena…

cs.DS2012

Split Scheduling with Uniform Setup Times

Frans Schalekamp, Rene Sitters, Suzanne van der Ster +3

We study a scheduling problem in which jobs may be split into parts, where the parts of a split job may be processed simultaneously on more than one machine. Each part of a job req…

cs.DS2011★ 1 cited

The traveling salesman problem on cubic and subcubic graphs

Sylvia Boyd, René Sitters, Suzanne van der Ster +1

We study the Travelling Salesman Problem (TSP) on the metric completion of cubic and subcubic graphs, which is known to be NP-hard. The problem is of interest because of its relati…

cs.DS2008★ 15 cited

Minimizing Flow Time in the Wireless Gathering Problem

Vincenzo Bonifaci, Peter Korteweg, Alberto Marchetti-Spaccamela +1

We address the problem of efficient data gathering in a wireless network through multi-hop communication. We focus on the objective of minimizing the maximum flow time of a data pa…