activity
20062024
most citedA Realistic Model under which the Genetic Code is Optimal

20 citations · 62 across the 20 of their papers we have counts for

collaborators

25 papers

cs.DS2024

Total Completion Time Scheduling Under Scenarios

Thomas Bosman, Martijn van Ee, Ekin Ergen +4

Scheduling jobs with given processing times on identical parallel machines so as to minimize their total completion time is one of the most basic scheduling problems. We study inte…

q-bio.PE2023

Constructing Phylogenetic Networks via Cherry Picking and Machine Learning

Giulia Bernardini, Leo van Iersel, Esther Julien +1

Combining a set of phylogenetic trees into a single phylogenetic network that explains all of them is a fundamental challenge in evolutionary studies. Existing methods are computat…

cs.DS2022★ 1 cited

Elastic-Degenerate String Matching with 1 Error

Giulia Bernardini, Estéban Gabory, Solon P. Pissis +3

An elastic-degenerate string is a sequence of finite sets of strings of total length , introduced to represent a set of related DNA sequences, also known as a pangenome. The…

cs.DS2022★ 1 cited

A Universal Error Measure for Input Predictions Applied to Online Graph Problems

Giulia Bernardini, Alexander Lindermayr, Alberto Marchetti-Spaccamela +3

We introduce a novel measure for quantifying the error in input predictions. The error is based on a minimum-cost hyperedge cover in a suitably defined hypergraph and provides a ge…

cs.DS2020

String Sanitization Under Edit Distance: Improved and Generalized

Takuya Mieno, Solon P. Pissis, Leen Stougie +1

Let be a string of length over an alphabet , be a positive integer, and be a set of length- substrings of . The ETFS problem asks us to construct…

cs.DM2020

Sampling hypergraphs with given degrees

Martin Dyer, Catherine Greenhill, Pieter Kleer +2

There is a well-known connection between hypergraphs and bipartite graphs, obtained by treating the incidence matrix of the hypergraph as the biadjacency matrix of a bipartite grap…