2 citations · 2 across the 2 of their papers we have counts for
3 papers
quant-ph2026
Lossless Reductions and Hybrid Sampling for Phylogeny Using the Maximum Compatibility Criterion
Orson Ye, James Bonfield, Joshua Cudby +2
Maximum compatibility provides a criterion for phylogenetic reconstruction in which the objective is to retain a maximum set of mutually compatible characters. For binary character…
quant-ph2025
Pangenome-guided sequence assembly via binary optimisation
Josh Cudby, James Bonfield, Chenxi Zhou +2
De novo genome assembly is challenging in highly repetitive regions; however, reference-guided assemblers often suffer from bias. We propose a framework for pangenome-guided sequen…
q-bio.PE2025★ 2 cited
WinPCA: A package for windowed principal component analysis
L. Moritz Blumer, Jeffrey M. Good, Richard Durbin
Principal component analysis (PCA) is routinely used in population genetics to assess genetic structure. With chromosomal reference genomes and population-scale whole genome-sequen…