4 citations · 12 across the 32 of their papers we have counts for
13 papers · 1 filter
ASIGN: An Anatomy-aware Spatial Imputation Graphic Network for 3D Spatial Transcriptomics
Junchao Zhu, Ruining Deng, Tianyuan Yao +9
Spatial transcriptomics (ST) is an emerging technology that enables medical computer vision scientists to automatically interpret the molecular profiles underlying morphological fe…
Glo-In-One-v2: Holistic Identification of Glomerular Cells, Tissues, and Lesions in Human and Mouse Histopathology
Lining Yu, Mengmeng Yin, Ruining Deng +9
Segmenting glomerular intraglomerular tissue and lesions traditionally depends on detailed morphological evaluations by expert nephropathologists, a labor-intensive process suscept…
GloFinder: AI-empowered QuPath Plugin for WSI-level Glomerular Detection, Visualization, and Curation
Jialin Yue, Tianyuan Yao, Ruining Deng +7
Artificial intelligence (AI) has demonstrated significant success in automating the detection of glomeruli, the key functional units of the kidney, from whole slide images (WSIs) i…
Evaluating Cell AI Foundation Models in Kidney Pathology with Human-in-the-Loop Enrichment
Junlin Guo, Siqi Lu, Can Cui +14
Training AI foundation models has emerged as a promising large-scale learning approach for addressing real-world healthcare challenges, including digital pathology. While many of t…
Cross-Species Data Integration for Enhanced Layer Segmentation in Kidney Pathology
Junchao Zhu, Mengmeng Yin, Ruining Deng +6
Accurate delineation of the boundaries between the renal cortex and medulla is crucial for subsequent functional structural analysis and disease diagnosis. Training high-quality de…
Assessment of Cell Nuclei AI Foundation Models in Kidney Pathology
Junlin Guo, Siqi Lu, Can Cui +14
Cell nuclei instance segmentation is a crucial task in digital kidney pathology. Traditional automatic segmentation methods often lack generalizability when applied to unseen datas…
PFPs: Prompt-guided Flexible Pathological Segmentation for Diverse Potential Outcomes Using Large Vision and Language Models
Can Cui, Ruining Deng, Junlin Guo +4
The Vision Foundation Model has recently gained attention in medical image analysis. Its zero-shot learning capabilities accelerate AI deployment and enhance the generalizability o…
HoloHisto: End-to-end Gigapixel WSI Segmentation with 4K Resolution Sequential Tokenization
Yucheng Tang, Yufan He, Vishwesh Nath +11
In digital pathology, the traditional method for deep learning-based image segmentation typically involves a two-stage process: initially segmenting high-resolution whole slide ima…
GLAM: Glomeruli Segmentation for Human Pathological Lesions using Adapted Mouse Model
Lining Yu, Mengmeng Yin, Ruining Deng +9
Moving from animal models to human applications in preclinical research encompasses a broad spectrum of disciplines in medical science. A fundamental element in the development of…
HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis
Ruining Deng, Quan Liu, Can Cui +10
Panoramic image segmentation in computational pathology presents a remarkable challenge due to the morphologically complex and variably scaled anatomy. For instance, the intricate…
Weighted Circle Fusion: Ensembling Circle Representation from Different Object Detection Results
Jialin Yue, Tianyuan Yao, Ruining Deng +5
Recently, the use of circle representation has emerged as a method to improve the identification of spherical objects (such as glomeruli, cells, and nuclei) in medical imaging stud…
PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation
Ruining Deng, Quan Liu, Can Cui +11
Understanding the anatomy of renal pathology is crucial for advancing disease diagnostics, treatment evaluation, and clinical research. The complex kidney system comprises various…
Circle Representation for Medical Instance Object Segmentation
Juming Xiong, Ethan H. Nguyen, Yilin Liu +8
Recently, circle representation has been introduced for medical imaging, designed specifically to enhance the detection of instance objects that are spherically shaped (e.g., cells…