most citedLingshu: A Generalist Foundation Model for Unified Multimodal Medical Understanding and Reasoning

5 citations · 14 across the 15 of their papers we have counts for

collaborators

17 papers

cs.LG2026

Agentic Fusion of Large Atomic and Language Models to Accelerate Superconductor Discovery

Mingze Li, Yu Rong, Songyou Li +16

Artificial intelligence has accelerated materials discovery through high-throughput prediction and generation, yet the decision problem remains a formidable bottleneck. While curre…

q-bio.QM2026

Lingshu-Cell: A generative cellular world model for transcriptome modeling toward virtual cells

Han Zhang, Guo-Hua Yuan, Chaohao Yuan +6

Modeling cellular states and predicting their responses to perturbations are central challenges in computational biology and the development of virtual cells. Existing foundation m…

cs.LG2025

ParaFormer: A Generalized PageRank Graph Transformer for Graph Representation Learning

Chaohao Yuan, Zhenjie Song, Ercan Engin Kuruoglu +5

Graph Transformers (GTs) have emerged as a promising graph learning tool, leveraging their all-pair connected property to effectively capture global information. To address the ove…

cs.CV2025

From Macro to Micro: Benchmarking Microscopic Spatial Intelligence on Molecules via Vision-Language Models

Zongzhao Li, Xiangzhe Kong, Jiahui Su +8

This paper introduces the concept of Microscopic Spatial Intelligence (MiSI), the capability to perceive and reason about the spatial relationships of invisible microscopic entitie…

cs.LG2025

Universally Invariant Learning in Equivariant GNNs

Jiacheng Cen, Anyi Li, Ning Lin +5

Equivariant Graph Neural Networks (GNNs) have demonstrated significant success across various applications. To achieve completeness -- that is, the universal approximation property…

cs.CL2025

GeoPQA: Bridging the Visual Perception Gap in MLLMs for Geometric Reasoning

Guizhen Chen, Weiwen Xu, Hao Zhang +4

Recent advancements in reinforcement learning (RL) have enhanced the reasoning abilities of large language models (LLMs), yet the impact on multimodal LLMs (MLLMs) is limited. Part…

cs.CV2025

VL-Cogito: Progressive Curriculum Reinforcement Learning for Advanced Multimodal Reasoning

Ruifeng Yuan, Chenghao Xiao, Sicong Leng +9

Reinforcement learning has proven its effectiveness in enhancing the reasoning capabilities of large language models. Recent research efforts have progressively extended this parad…

cs.LG2025★ 1 cited

DiffSpectra: Molecular Structure Elucidation from Spectra using Diffusion Models

Liang Wang, Yu Rong, Tingyang Xu +7

Molecular structure elucidation from spectra is a fundamental challenge in molecular science. Conventional approaches rely heavily on expert interpretation and lack scalability, wh…

cs.CL2025★ 5 cited

Lingshu: A Generalist Foundation Model for Unified Multimodal Medical Understanding and Reasoning

LASA Team, Weiwen Xu, Hou Pong Chan +16

Multimodal Large Language Models (MLLMs) have demonstrated impressive capabilities in understanding common visual elements, largely due to their large-scale datasets and advanced t…

cs.CV2025

STAR-R1: Spatial TrAnsformation Reasoning by Reinforcing Multimodal LLMs

Zongzhao Li, Zongyang Ma, Mingze Li +6

Multimodal Large Language Models (MLLMs) have demonstrated remarkable capabilities across diverse tasks, yet they lag significantly behind humans in spatial reasoning. We investiga…

cs.CL2025

Babel: Open Multilingual Large Language Models Serving Over 90% of Global Speakers

Yiran Zhao, Chaoqun Liu, Yue Deng +8

Large language models (LLMs) have revolutionized natural language processing (NLP), yet open-source multilingual LLMs remain scarce, with existing models often limited in language…

cs.LG2025★ 1 cited

CirT: Global Subseasonal-to-Seasonal Forecasting with Geometry-inspired Transformer

Yang Liu, Zinan Zheng, Jiashun Cheng +4

Accurate Subseasonal-to-Seasonal (S2S) climate forecasting is pivotal for decision-making including agriculture planning and disaster preparedness but is known to be challenging du…

cs.LG2025

MolSpectra: Pre-training 3D Molecular Representation with Multi-modal Energy Spectra

Liang Wang, Shaozhen Liu, Yu Rong +3

Establishing the relationship between 3D structures and the energy states of molecular systems has proven to be a promising approach for learning 3D molecular representations. Howe…

cs.LG2025★ 2 cited

Large Language-Geometry Model: When LLM meets Equivariance

Zongzhao Li, Jiacheng Cen, Bing Su +4

Accurately predicting 3D structures and dynamics of physical systems is crucial in scientific applications. Existing approaches that rely on geometric Graph Neural Networks (GNNs)…

cs.DB2025★ 1 cited

Can Large Language Models Be Query Optimizer for Relational Databases?

Jie Tan, Kangfei Zhao, Rui Li +6

Query optimization, which finds the optimized execution plan for a given query, is a complex planning and decision-making problem within the exponentially growing plan space in dat…

cs.CL2025

FINEREASON: Evaluating and Improving LLMs' Deliberate Reasoning through Reflective Puzzle Solving

Guizhen Chen, Weiwen Xu, Hao Zhang +6

Many challenging reasoning tasks require not just rapid, intuitive responses, but a more deliberate, multi-step approach. Recent progress in large language models (LLMs) highlights…

cs.LG2025★ 4 cited

A Survey of Graph Transformers: Architectures, Theories and Applications

Chaohao Yuan, Kangfei Zhao, Ercan Engin Kuruoglu +6

Graph Transformers (GTs) have demonstrated a strong capability in modeling graph structures by addressing the intrinsic limitations of graph neural networks (GNNs), such as over-sm…