activity
20242026
most citedA Survey of Graph Transformers: Architectures, Theories and Applications

4 citations · 11 across the 7 of their papers we have counts for

collaborators

9 papers

cs.LG2026

Agentic Fusion of Large Atomic and Language Models to Accelerate Superconductor Discovery

Mingze Li, Yu Rong, Songyou Li +16

Artificial intelligence has accelerated materials discovery through high-throughput prediction and generation, yet the decision problem remains a formidable bottleneck. While curre…

cs.CV2025

From Macro to Micro: Benchmarking Microscopic Spatial Intelligence on Molecules via Vision-Language Models

Zongzhao Li, Xiangzhe Kong, Jiahui Su +8

This paper introduces the concept of Microscopic Spatial Intelligence (MiSI), the capability to perceive and reason about the spatial relationships of invisible microscopic entitie…

cs.LG2025

Universally Invariant Learning in Equivariant GNNs

Jiacheng Cen, Anyi Li, Ning Lin +5

Equivariant Graph Neural Networks (GNNs) have demonstrated significant success across various applications. To achieve completeness -- that is, the universal approximation property…

cs.CL2025

ReasonMed: A 370K Multi-Agent Generated Dataset for Advancing Medical Reasoning

Yu Sun, Xingyu Qian, Weiwen Xu +8

Reasoning-based large language models have excelled in mathematics and programming, yet their potential in knowledge-intensive medical question answering remains underexplored and…

cs.CV2025

STAR-R1: Spatial TrAnsformation Reasoning by Reinforcing Multimodal LLMs

Zongzhao Li, Zongyang Ma, Mingze Li +6

Multimodal Large Language Models (MLLMs) have demonstrated remarkable capabilities across diverse tasks, yet they lag significantly behind humans in spatial reasoning. We investiga…

cs.LG2025★ 2 cited

Large Language-Geometry Model: When LLM meets Equivariance

Zongzhao Li, Jiacheng Cen, Bing Su +4

Accurately predicting 3D structures and dynamics of physical systems is crucial in scientific applications. Existing approaches that rely on geometric Graph Neural Networks (GNNs)…

cs.LG2025★ 4 cited

A Survey of Graph Transformers: Architectures, Theories and Applications

Chaohao Yuan, Kangfei Zhao, Ercan Engin Kuruoglu +6

Graph Transformers (GTs) have demonstrated a strong capability in modeling graph structures by addressing the intrinsic limitations of graph neural networks (GNNs), such as over-sm…

cs.LG2024★ 4 cited

Equivariant Spatio-Temporal Attentive Graph Networks to Simulate Physical Dynamics

Liming Wu, Zhichao Hou, Jirui Yuan +2

Learning to represent and simulate the dynamics of physical systems is a crucial yet challenging task. Existing equivariant Graph Neural Network (GNN) based methods have encapsulat…

q-bio.QM2024★ 1 cited

Annotation-guided Protein Design with Multi-Level Domain Alignment

Chaohao Yuan, Songyou Li, Geyan Ye +6

The core challenge of de novo protein design lies in creating proteins with specific functions or properties, guided by certain conditions. Current models explore to generate prote…