activity
20232026
most citedMolCRAFT: Structure-Based Drug Design in Continuous Parameter Space

10 citations · 22 across the 16 of their papers we have counts for

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Showing 2025Show all

5 papers · 1 filter

cs.LG2025

ShortListing Model: A Streamlined SimplexDiffusion for Discrete Variable Generation

Yuxuan Song, Zhe Zhang, Yu Pei +7

Generative modeling of discrete variables is challenging yet crucial for applications in natural language processing and biological sequence design. We introduce the Shortlisting M…

cs.CL2025

MemAgent: Reshaping Long-Context LLM with Multi-Conv RL-based Memory Agent

Hongli Yu, Tinghong Chen, Jiangtao Feng +8

Despite improvements by length extrapolation, efficient attention and memory modules, handling infinitely long documents with linear complexity without performance degradation duri…

q-bio.BM2025

Piloting Structure-Based Drug Design via Modality-Specific Optimal Schedule

Keyue Qiu, Yuxuan Song, Zhehuan Fan +5

Structure-Based Drug Design (SBDD) is crucial for identifying bioactive molecules. Recent deep generative models are faced with challenges in geometric structure modeling. A major…

q-bio.BM2025★ 1 cited

Steering Protein Family Design through Profile Bayesian Flow

Jingjing Gong, Yu Pei, Siyu Long +7

Protein family design emerges as a promising alternative by combining the advantages of de novo protein design and mutation-based directed evolution.In this paper, we propose Profi…

cs.LG2025★ 2 cited

A Periodic Bayesian Flow for Material Generation

Hanlin Wu, Yuxuan Song, Jingjing Gong +6

Generative modeling of crystal data distribution is an important yet challenging task due to the unique periodic physical symmetry of crystals. Diffusion-based methods have shown e…