41 citations · 137 across the 34 of their papers we have counts for
13 papers · 1 filter
Unlocking the Potential of Digital Pathology: Novel Baselines for Compression
Maximilian Fischer, Peter Neher, Peter Schüffler +13
Digital pathology offers a groundbreaking opportunity to transform clinical practice in histopathological image analysis, yet faces a significant hurdle: the substantial file sizes…
Scaling nnU-Net for CBCT Segmentation
Fabian Isensee, Yannick Kirchhoff, Lars Kraemer +3
This paper presents our approach to scaling the nnU-Net framework for multi-structure segmentation on Cone Beam Computed Tomography (CBCT) images, specifically in the scope of the…
An OpenMind for 3D medical vision self-supervised learning
Tassilo Wald, Constantin Ulrich, Jonathan Suprijadi +5
The field of self-supervised learning (SSL) for 3D medical images lacks consistency and standardization. While many methods have been developed, it is impossible to identify the cu…
RadioActive: 3D Radiological Interactive Segmentation Benchmark
Constantin Ulrich, Tassilo Wald, Emily Tempus +3
Effortless and precise segmentation with minimal clinician effort could greatly streamline clinical workflows. Recent interactive segmentation models, inspired by METAs Segment Any…
Touchstone Benchmark: Are We on the Right Way for Evaluating AI Algorithms for Medical Segmentation?
Pedro R. A. S. Bassi, Wenxuan Li, Yucheng Tang +50
How can we test AI performance? This question seems trivial, but it isn't. Standard benchmarks often have problems such as in-distribution and small-size test sets, oversimplified…
Decoupling Semantic Similarity from Spatial Alignment for Neural Networks
Tassilo Wald, Constantin Ulrich, Gregor Köhler +6
What representation do deep neural networks learn? How similar are images to each other for neural networks? Despite the overwhelming success of deep learning methods key questions…
From FDG to PSMA: A Hitchhiker's Guide to Multitracer, Multicenter Lesion Segmentation in PET/CT Imaging
Maximilian Rokuss, Balint Kovacs, Yannick Kirchhoff +4
Automated lesion segmentation in PET/CT scans is crucial for improving clinical workflows and advancing cancer diagnostics. However, the task is challenging due to physiological va…
Revisiting MAE pre-training for 3D medical image segmentation
Tassilo Wald, Constantin Ulrich, Stanislav Lukyanenko +6
Self-Supervised Learning (SSL) presents an exciting opportunity to unlock the potential of vast, untapped clinical datasets, for various downstream applications that suffer from th…
Longitudinal Segmentation of MS Lesions via Temporal Difference Weighting
Maximilian Rokuss, Yannick Kirchhoff, Saikat Roy +9
Accurate segmentation of Multiple Sclerosis (MS) lesions in longitudinal MRI scans is crucial for monitoring disease progression and treatment efficacy. Although changes across tim…
Data-Centric Strategies for Overcoming PET/CT Heterogeneity: Insights from the AutoPET III Lesion Segmentation Challenge
Balint Kovacs, Shuhan Xiao, Maximilian Rokuss +3
The third autoPET challenge introduced a new data-centric task this year, shifting the focus from model development to improving metastatic lesion segmentation on PET/CT images thr…
Mitigating False Predictions In Unreasonable Body Regions
Constantin Ulrich, Catherine Knobloch, Julius C. Holzschuh +7
Despite considerable strides in developing deep learning models for 3D medical image segmentation, the challenge of effectively generalizing across diverse image distributions pers…
nnU-Net Revisited: A Call for Rigorous Validation in 3D Medical Image Segmentation
Fabian Isensee, Tassilo Wald, Constantin Ulrich +4
The release of nnU-Net marked a paradigm shift in 3D medical image segmentation, demonstrating that a properly configured U-Net architecture could still achieve state-of-the-art re…
Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures
Yannick Kirchhoff, Maximilian R. Rokuss, Saikat Roy +8
Accurately segmenting thin tubular structures, such as vessels, nerves, roads or concrete cracks, is a crucial task in computer vision. Standard deep learning-based segmentation lo…