41 citations · 137 across the 34 of their papers we have counts for
37 papers
Anguinus Sculpturae: Compositional Synthesis of Peak-Enhancement Breast DCE-MRI Scans
Benjamin Hamm, Nico Albert Disch, Maximilian Rokuss +3
Dynamic contrast-enhanced breast MRI (DCE-MRI) is rich in anatomical and perfusion information, but its reliance on gadolinium-based contrast agents raises safety concerns and adds…
Feature Space Guidance for Breast Cancer Classification in DCE-MRI
Benjamin Hamm, Yannick Kirchhoff, Maximilian Rokuss +6
Dynamic contrast enhanced breast MRI (DCE-MRI) is a powerful clinical tool for breast cancer detection, providing high resolution anatomical detail together with rich temporal cont…
Resolution Meets Reduction: Efficient Visual Context for 3D Radiology Report Generation
Jonathan Suprijadi, Raphael Stock, Moritz Langenberg +10
Vision-language models offer a promising path toward automating radiology report generation, but applying them to full 3D CT volumes poses substantial computational challenges. Mod…
Towards Brain MRI Foundation Models for the Clinic: Findings from the FOMO25 Challenge
Asbjørn Munk, Stefano Cerri, Vardan Nersesjan +81
Clinical deployment of automated brain MRI analysis faces a fundamental challenge: clinical data is heterogeneous and noisy, and high-quality labels are prohibitively costly to obt…
TriALS: Triphasic-Aided Liver Lesion Segmentation Benchmark in Non-Contrast CT
Marawan Elbatel, Mohamed Ghonim, Jiaji Mao +62
Automated segmentation of liver lesions on non-contrast computed tomography (NCCT) is clinically important but fundamentally challenging, particularly in low-resource settings acro…
MedNeXt-v2: Scaling 3D ConvNeXts for Large-Scale Supervised Representation Learning in Medical Image Segmentation
Saikat Roy, Yannick Kirchhoff, Constantin Ulrich +4
Large-scale supervised pretraining is rapidly reshaping 3D medical image segmentation. However, existing efforts focus primarily on increasing dataset size and overlook the questio…
CRONOS: Continuous Time Reconstruction for 4D Medical Longitudinal Series
Nico Albert Disch, Saikat Roy, Constantin Ulrich +5
Forecasting how 3D medical scans evolve over time is important for disease progression, treatment planning, and developmental assessment. Yet existing models either rely on a singl…
VoxTell: Free-Text Promptable Universal 3D Medical Image Segmentation
Maximilian Rokuss, Moritz Langenberg, Yannick Kirchhoff +8
We introduce VoxTell, a vision-language model for text-prompted volumetric medical image segmentation. It maps free-form descriptions, from single words to full clinical sentences,…
The Missing Piece: A Case for Pre-Training in 3D Medical Object Detection
Katharina Eckstein, Constantin Ulrich, Michael Baumgartner +5
Large-scale pre-training holds the promise to advance 3D medical object detection, a crucial component of accurate computer-aided diagnosis. Yet, it remains underexplored compared…
Temporal Flow Matching for Learning Spatio-Temporal Trajectories in 4D Longitudinal Medical Imaging
Nico Albert Disch, Yannick Kirchhoff, Robin Peretzke +5
Understanding temporal dynamics in medical imaging is crucial for applications such as disease progression modeling, treatment planning and anatomical development tracking. However…
Large Scale Supervised Pretraining For Traumatic Brain Injury Segmentation
Constantin Ulrich, Tassilo Wald, Fabian Isensee +1
The segmentation of lesions in Moderate to Severe Traumatic Brain Injury (msTBI) presents a significant challenge in neuroimaging due to the diverse characteristics of these lesion…
Enhanced Diagnostic Fidelity in Pathology Whole Slide Image Compression via Deep Learning
Maximilian Fischer, Peter Neher, Peter Schüffler +9
Accurate diagnosis of disease often depends on the exhaustive examination of Whole Slide Images (WSI) at microscopic resolution. Efficient handling of these data-intensive images r…
nnInteractive: Redefining 3D Promptable Segmentation
Fabian Isensee, Maximilian Rokuss, Lars Krämer +10
Accurate and efficient 3D segmentation is essential for both clinical and research applications. While foundation models like SAM have revolutionized interactive segmentation, thei…
Primus: Enforcing Attention Usage for 3D Medical Image Segmentation
Tassilo Wald, Saikat Roy, Fabian Isensee +7
Transformers have achieved remarkable success across multiple fields, yet their impact on 3D medical image segmentation remains limited with convolutional networks still dominating…
LesionLocator: Zero-Shot Universal Tumor Segmentation and Tracking in 3D Whole-Body Imaging
Maximilian Rokuss, Yannick Kirchhoff, Seval Akbal +7
In this work, we present LesionLocator, a framework for zero-shot longitudinal lesion tracking and segmentation in 3D medical imaging, establishing the first end-to-end model capab…
A Unified Framework for Foreground and Anonymization Area Segmentation in CT and MRI Data
Michal Nohel, Constantin Ulrich, Jonathan Suprijadi +2
This study presents an open-source toolkit to address critical challenges in preprocessing data for self-supervised learning (SSL) for 3D medical imaging, focusing on data privacy…
Expectation-Maximization as the Engine of Scalable Medical Intelligence
Wenxuan Li, Pedro R. A. S. Bassi, Tianyu Lin +19
Large, high-quality, annotated datasets are the foundation of medical AI research, but constructing even a small, moderate-quality, annotated dataset can take years of effort from…
Unlocking the Potential of Digital Pathology: Novel Baselines for Compression
Maximilian Fischer, Peter Neher, Peter Schüffler +13
Digital pathology offers a groundbreaking opportunity to transform clinical practice in histopathological image analysis, yet faces a significant hurdle: the substantial file sizes…
Scaling nnU-Net for CBCT Segmentation
Fabian Isensee, Yannick Kirchhoff, Lars Kraemer +3
This paper presents our approach to scaling the nnU-Net framework for multi-structure segmentation on Cone Beam Computed Tomography (CBCT) images, specifically in the scope of the…
An OpenMind for 3D medical vision self-supervised learning
Tassilo Wald, Constantin Ulrich, Jonathan Suprijadi +5
The field of self-supervised learning (SSL) for 3D medical images lacks consistency and standardization. While many methods have been developed, it is impossible to identify the cu…
RadioActive: 3D Radiological Interactive Segmentation Benchmark
Constantin Ulrich, Tassilo Wald, Emily Tempus +3
Effortless and precise segmentation with minimal clinician effort could greatly streamline clinical workflows. Recent interactive segmentation models, inspired by METAs Segment Any…
Touchstone Benchmark: Are We on the Right Way for Evaluating AI Algorithms for Medical Segmentation?
Pedro R. A. S. Bassi, Wenxuan Li, Yucheng Tang +50
How can we test AI performance? This question seems trivial, but it isn't. Standard benchmarks often have problems such as in-distribution and small-size test sets, oversimplified…
Decoupling Semantic Similarity from Spatial Alignment for Neural Networks
Tassilo Wald, Constantin Ulrich, Gregor Köhler +6
What representation do deep neural networks learn? How similar are images to each other for neural networks? Despite the overwhelming success of deep learning methods key questions…
From FDG to PSMA: A Hitchhiker's Guide to Multitracer, Multicenter Lesion Segmentation in PET/CT Imaging
Maximilian Rokuss, Balint Kovacs, Yannick Kirchhoff +4
Automated lesion segmentation in PET/CT scans is crucial for improving clinical workflows and advancing cancer diagnostics. However, the task is challenging due to physiological va…