65 citations · 104 across the 30 of their papers we have counts for
34 papers
nnInteractive Agent: General-Purpose AI Agents as 3D Image Annotators
Fabian Isensee, Constantin Ulrich Harsy, Maximilian Rokuss +3
Interactive 3D segmentation models such as nnInteractive turn a few spatial prompts (points, scribbles, boxes) into accurate volumetric masks, but a human still does the annotation…
Anguinus Sculpturae: Compositional Synthesis of Peak-Enhancement Breast DCE-MRI Scans
Benjamin Hamm, Nico Albert Disch, Maximilian Rokuss +3
Dynamic contrast-enhanced breast MRI (DCE-MRI) is rich in anatomical and perfusion information, but its reliance on gadolinium-based contrast agents raises safety concerns and adds…
Feature Space Guidance for Breast Cancer Classification in DCE-MRI
Benjamin Hamm, Yannick Kirchhoff, Maximilian Rokuss +6
Dynamic contrast enhanced breast MRI (DCE-MRI) is a powerful clinical tool for breast cancer detection, providing high resolution anatomical detail together with rich temporal cont…
nnFoundation: 3D Foundation Models for Radiology
Constantin Ulrich Harsy, Tassilo Wald, Karol Gotkowski +80
Radiological artificial intelligence has advanced rapidly, yet most systems remain narrowly task-specific, data-intensive, and fragile under domain shift. Foundation models promise…
Resolution Meets Reduction: Efficient Visual Context for 3D Radiology Report Generation
Jonathan Suprijadi, Raphael Stock, Moritz Langenberg +10
Vision-language models offer a promising path toward automating radiology report generation, but applying them to full 3D CT volumes poses substantial computational challenges. Mod…
GLOW-FDG: Generalized cancer LesiOn Whole-body segmentation model for F-FDG-PET/CT
Maksym Fritsak, Maximilian Rokuss, Hubert S. Gabryś +10
Whole-body fluorodeoxyglucose positron emission tomography combined with computed tomography is widely used in cancer care, but manual lesion delineation is slow, subjective, and d…
Rethinking Post-Hoc Calibration in Semantic Segmentation
Tristan Kirscher, Kim-Celine Kahl, Balint Kovacs +5
Reliable confidence estimates are essential in semantic segmentation, yet modern models often remain miscalibrated. We investigate two overlooked issues in post-hoc calibration. Fi…
HealthAgentBench: A Unified Benchmark Suite of Realistic Agentic Healthcare Environments for Challenging Frontier AI Agents
Qianchu Liu, Sheng Zhang, Guanghui Qin +16
As AI agents become increasingly capable of complex, long-horizon reasoning, rigorous and holistic evaluation is essential for measuring progress toward real-world healthcare appli…
Exploiting Longitudinal Context in Clinician-Verified Interactive Lesion Tracking
Yannick Kirchhoff, Maximilian Rokuss, Daniel Philipp Mertens +5
Tracking tumor lesions across serial CT scans is essential for oncological response assessment. Existing automated methods face a fundamental trade-off: end-to-end trackers achieve…
Lost in the Folds: When Cross-Validation Is Not a Deep Ensemble for Uncertainty Estimation
Tristan Kirscher, Markus Bujotzek, Yannick Kirchhoff +5
Ensemble disagreement is widely used as a proxy for epistemic uncertainty in medical image segmentation. In practice, many studies form ensembles via K-fold cross-validation (CV),…
TriALS: Triphasic-Aided Liver Lesion Segmentation Benchmark in Non-Contrast CT
Marawan Elbatel, Mohamed Ghonim, Jiaji Mao +62
Automated segmentation of liver lesions on non-contrast computed tomography (NCCT) is clinically important but fundamentally challenging, particularly in low-resource settings acro…
The autoPET3 Challenge: Automated Lesion Segmentation in Whole-Body PET/CT $\unicode{x2013}$ Multitracer Multicenter Generalization
Jakob Dexl, Katharina Jeblick, Andreas Mittermeier +27
We report the design and results of the third autoPET challenge (MICCAI 2024), which benchmarked automated lesion segmentation in whole-body PET/CT under a compositional generaliza…
CRONOS: Continuous Time Reconstruction for 4D Medical Longitudinal Series
Nico Albert Disch, Saikat Roy, Constantin Ulrich +5
Forecasting how 3D medical scans evolve over time is important for disease progression, treatment planning, and developmental assessment. Yet existing models either rely on a singl…
VoxTell: Free-Text Promptable Universal 3D Medical Image Segmentation
Maximilian Rokuss, Moritz Langenberg, Yannick Kirchhoff +8
We introduce VoxTell, a vision-language model for text-prompted volumetric medical image segmentation. It maps free-form descriptions, from single words to full clinical sentences,…
MeisenMeister: A Simple Two Stage Pipeline for Breast Cancer Classification on MRI
Benjamin Hamm, Yannick Kirchhoff, Maximilian Rokuss +1
The ODELIA Breast MRI Challenge 2025 addresses a critical issue in breast cancer screening: improving early detection through more efficient and accurate interpretation of breast M…
Promptable Longitudinal Lesion Segmentation in Whole-Body CT
Yannick Kirchhoff, Maximilian Rokuss, Fabian Isensee +1
Accurate segmentation of lesions in longitudinal whole-body CT is essential for monitoring disease progression and treatment response. While automated methods benefit from incorpor…
A Multi-Stage Fine-Tuning and Ensembling Strategy for Pancreatic Tumor Segmentation in Diagnostic and Therapeutic MRI
Omer Faruk Durugol, Maximilian Rokuss, Yannick Kirchhoff +1
Automated segmentation of Pancreatic Ductal Adenocarcinoma (PDAC) from MRI is critical for clinical workflows but is hindered by poor tumor-tissue contrast and a scarcity of annota…
Towards Interactive Lesion Segmentation in Whole-Body PET/CT with Promptable Models
Maximilian Rokuss, Yannick Kirchhoff, Fabian Isensee +1
Whole-body PET/CT is a cornerstone of oncological imaging, yet accurate lesion segmentation remains challenging due to tracer heterogeneity, physiological uptake, and multi-center…
Temporal Flow Matching for Learning Spatio-Temporal Trajectories in 4D Longitudinal Medical Imaging
Nico Albert Disch, Yannick Kirchhoff, Robin Peretzke +5
Understanding temporal dynamics in medical imaging is crucial for applications such as disease progression modeling, treatment planning and anatomical development tracking. However…
nnInteractive: Redefining 3D Promptable Segmentation
Fabian Isensee, Maximilian Rokuss, Lars Krämer +10
Accurate and efficient 3D segmentation is essential for both clinical and research applications. While foundation models like SAM have revolutionized interactive segmentation, thei…
LesionLocator: Zero-Shot Universal Tumor Segmentation and Tracking in 3D Whole-Body Imaging
Maximilian Rokuss, Yannick Kirchhoff, Seval Akbal +7
In this work, we present LesionLocator, a framework for zero-shot longitudinal lesion tracking and segmentation in 3D medical imaging, establishing the first end-to-end model capab…
Multi-Class Segmentation of Aortic Branches and Zones in Computed Tomography Angiography: The AortaSeg24 Challenge
Muhammad Imran, Jonathan R. Krebs, Vishal Balaji Sivaraman +60
Multi-class segmentation of the aorta in computed tomography angiography (CTA) scans is essential for diagnosing and planning complex endovascular treatments for patients with aort…
Tumor Detection, Segmentation and Classification Challenge on Automated 3D Breast Ultrasound: The TDSC-ABUS Challenge
Gongning Luo, Mingwang Xu, Hongyu Chen +34
Breast cancer is one of the most common causes of death among women worldwide. Early detection helps in reducing the number of deaths. Automated 3D Breast Ultrasound (ABUS) is a ne…
Expectation-Maximization as the Engine of Scalable Medical Intelligence
Wenxuan Li, Pedro R. A. S. Bassi, Tianyu Lin +19
Large, high-quality, annotated datasets are the foundation of medical AI research, but constructing even a small, moderate-quality, annotated dataset can take years of effort from…