7 papers
Automated Arrangements of Multi-Part Music for Sets of Monophonic Instruments
Matthew Mccloskey, Gabrielle Curcio, Amulya Badineni +2
Arranging music for a different set of instruments that it was originally written for is traditionally a tedious and time-consuming process, performed by experts with intricate kno…
Synthesis Cost-Optimal Targeted Mutant Protein Libraries
Dimitris Papamichail, Madeline Febinger, Shm Almeda +1
Protein variant libraries produced by site-directed mutagenesis are a useful tool utilized by protein engineers to explore variants with potentially improved properties, such as ac…
Most Compact Parsimonious Trees
Dimitris Papamichail, Angela Huang, Andrew Miller +3
Construction of phylogenetic trees has traditionally focused on binary trees where all species appear on leaves, a problem for which numerous efficient solutions have been develope…
Codon Context Optimization in Synthetic Gene Design
Dimitris Papamichail, Hongmei Liu, Vitor Machado +3
Advances in de novo synthesis of DNA and computational gene design methods make possible the customization of genes by direct manipulation of features such as codon bias and mRNA s…
Static Level Ancestors in Practice
Matthew Mabrey, Thomas Caputi, Georgios Papamichail +1
Given a rooted tree T, the level ancestor problem aims to answer queries of the form LA(v, d), which identify the level d ancestor of a node v in the tree. Several algorithms of va…
Towards a Taxonomical Consensus: Diversity and Richness Inference from Large Scale rRNA gene Analysis
Dimitris Papamichail, Celine C. Lesaulnier, Steven Skiena +3
Population analysis is persistently challenging but important, leading to the determination of diversity and function prediction of microbial community members. Here we detail our…
Call Admission Control Algorithm for pre-stored VBR video streams
Christos Tryfonas, Dimitris Papamichail, Andrew Mehler +1
We examine the problem of accepting a new request for a pre-stored VBR video stream that has been smoothed using any of the smoothing algorithms found in the literature. The output…