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cond-mat.soft2024
Length-dependent residence time of contacts in simple polymeric models
E. Marchi, G. Tiana
Starting from the reported experimental evidence that the residence time of contacts between the ends of biopolymers is length dependent, we investigate the kinetics of contact bre…
physics.chem-ph2024
Predicting the binding of small molecules to proteins through invariant representation of the molecular structure
R. Beccaria, A. Lazzeri, G. Tiana
We present a computational scheme for predicting the ligands that bind to a pocket of known structure. It is based on the generation of a general abstract representation of the mol…
q-bio.BM2024
Effective model of protein--mediated interactions in chromatin
Francesco Borando, Guido Tiana
Protein-mediated interactions are ubiquitous in the cellular environment, and particularly in the nucleus, where they are responsible for the structuring of chromatin. We show thro…