108 citations · 509 across the 35 of their papers we have counts for
35 papers
Locality of contacts determines the subdiffusion exponents in polymeric models of chromatin
E. Marchi, Y. Zhan, G. Tiana
Loop extrusion by motor proteins mediates the attractive interactions in chromatin on the length scale of megabases, providing the polymer with a well-defined structure and at the…
Key interaction patterns in proteins revealed by cluster expansion of the partition function
M. Tajana, A. Trovato, G. Tiana
The native conformation of structured proteins is stabilized by a complex network of interactions. We analyzed the elementary patterns that constitute such network and ranked them…
Effective Model of Loop Extrusion Predicts Chromosomal Domains
M. Crippa, Y. Zhan, G. Tiana
An active loop-extrusion mechanism is regarded as the main out--of--equilibrium mechanism responsible for the structuring of megabase-sized domains in chromosomes. We developed a m…
Molecular recognition between cadherins studied by a coarse-grained model interacting with a coevolutionary potential
S. Terzoli, G. Tiana
Studying the conformations involved in the dimerization of cadherins is highly relevant to understand the development of tissue and its failure, which is associated with tumors and…
Prediction of native contacts in proteins from an out--of--equilibrium coevolutionary process
D. Oriani, M. Cagiada, G. Tiana
The analysis of coevolution of residues in homologous proteins is a powerful tool to predict their native conformation. The standard framework in which coevolutionary analysis is u…
Bifractal nature of chromosome contact maps
Simone Pigolotti, Mogens H. Jensen, Yinxiu Zhan +1
Modern biological techniques such as Hi-C permit to measure probabilities that different chromosomal regions are close in space. These probabilities can be visualised as matrices c…