156 citations · 236 across the 5 of their papers we have counts for
5 papers
How knots influence properties of proteins
Joanna I. Sułkowska, Piotr Sułkowski, P. Szymczak +1
Molecular dynamics studies within a coarse-grained structure based model were used on two similar proteins belonging to the transcarbamylase family to probe the effects in the nati…
Energy landscape of ubiquitin modulated by periodic forces: Asymmetric protein stability and shifts in unfolding pathways
P. Szymczak, Harald Janovjak
Biological forces govern essential cellular and molecular processes in all living organisms. Many cellular forces, e.g. those generated in cyclic conformational changes of biologic…
Diagrammatic approach to response problems in composite systems
P. Szymczak, B. Cichocki
The bulk macroscopic response of a system of particles or inclusions with field-induced forces is studied. The susceptibilities and transport coefficients in such a system are expr…
Stretching of proteins in a uniform flow
P. Szymczak, Marek Cieplak
Stretching of a protein by a fluid flow is compared to that in a force-clamp apparatus. The comparison is made within a simple topology-based dynamical model of a protein in which…
Protein folding in a force-clamp
Marek Cieplak, Piotr Szymczak
Kinetics of folding of a protein held in a force-clamp are compared to an unconstrained folding. The comparison is made within a simple topology-based dynamical model of ubiquitin.…