39 citations · 42 across the 11 of their papers we have counts for
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cs.DS2013★ 3 cited
AliBI: An Alignment-Based Index for Genomic Datasets
Hector Ferrada, Travis Gagie, Tommi Hirvola +1
With current hardware and software, a standard computer can now hold in RAM an index for approximate pattern matching on about half a dozen human genomes. Sequencing technologies h…
cs.DS2013★ 39 cited
Hybrid Indexes for Repetitive Datasets
H. Ferrada, T. Gagie, T. Hirvola +1
Advances in DNA sequencing mean databases of thousands of human genomes will soon be commonplace. In this paper we introduce a simple technique for reducing the size of conventiona…