activity
20132026
most citedHybrid Indexes for Repetitive Datasets

39 citations · 42 across the 11 of their papers we have counts for

collaborators

11 papers

cs.DC2026

Leveraging Mathematical Reasoning of LLMs for Efficient GPU Thread Mapping

Jose Maureira, Cristóbal A. Navarro, Hector Ferrada +1

Mapping parallel threads onto non-box-shaped domains is a known challenge in GPU computing; efficient mapping prevents performance penalties from unnecessary resource allocation. C…

cs.AI2026

Structural Segmentation of the Minimum Set Cover Problem: Exploiting Universe Decomposability for Metaheuristic Optimization

Isidora Hernández, Héctor Ferrada, Cristóbal A. Navarro

The Minimum Set Cover Problem (MSCP) is a classical NP-hard combinatorial optimization problem with numerous applications in science and engineering. Although a wide range of exact…

cs.DC2026

Ray Tracing Cores for General-Purpose Computing: A Literature Review

Enzo Meneses, Cristóbal A. Navarro, Héctor Ferrada +2

Recent research on ray tracing cores has explored repurposing these cores to solve non-graphical problems by reformulating them as geometric queries, leveraging the inherent parall…

cs.CG2026

Convex Hull 3D Filtering with GPU Ray Tracing and Tensor Cores

Roberto Carrasco, Enzo Meneses, Hector Ferrada +2

In recent years, applications such as real-time simulations, autonomous systems, and video games increasingly demand the processing of complex geometric models under stringent time…

cs.DC2024

CAT: Cellular Automata on Tensor cores

Cristóbal A. Navarro, Felipe A. Quezada, Enzo Meneses +2

Cellular automata (CA) are simulation models that can produce complex emergent behaviors from simple local rules. Although state-of-the-art GPU solutions are already fast due to th…

cs.DC2023

Accelerating Range Minimum Queries with Ray Tracing Cores

Enzo Meneses, Cristóbal A. Navarro, Héctor Ferrada +1

During the last decade GPU technology has shifted from pure general purpose computation to the inclusion of application specific integrated circuits (ASICs), such as Tensor Cores a…

cs.DC2023

An Evaluation of GPU Filters for Accelerating the 2D Convex Hull

Roberto Carrasco, Héctor Ferrada, Cristóbal A. Navarro +1

The Convex Hull algorithm is one of the most important algorithms in computational geometry, with many applications such as in computer graphics, robotics, and data mining. Despite…

cs.DC2022

Accelerating the Convex Hull Computation with a Parallel GPU Algorithm

Alan Keith, Héctor Ferrada, Cristóbal A. Navarro

The convex hull is a fundamental geometrical structure for many applications where groups of points must be enclosed or represented by a convex polygon. Although efficient sequenti…

cs.DC2022

GGArray: A Dynamically Growable GPU Array

Enzo Meneses, Cristóbal A. Navarro, Héctor Ferrada

We present a dynamically Growable GPU array (GGArray) fully implemented in GPU that does not require synchronization with the host. The idea is to improve the programming of GPU ap…

cs.DS2013★ 3 cited

AliBI: An Alignment-Based Index for Genomic Datasets

Hector Ferrada, Travis Gagie, Tommi Hirvola +1

With current hardware and software, a standard computer can now hold in RAM an index for approximate pattern matching on about half a dozen human genomes. Sequencing technologies h…

cs.DS2013★ 39 cited

Hybrid Indexes for Repetitive Datasets

H. Ferrada, T. Gagie, T. Hirvola +1

Advances in DNA sequencing mean databases of thousands of human genomes will soon be commonplace. In this paper we introduce a simple technique for reducing the size of conventiona…