most citedPredicting microsatellite instability and key biomarkers in colorectal cancer from H&E-stained images: Achieving SOTA predictive performance with fewer data using Swin Transformer

35 citations · 59 across the 9 of their papers we have counts for

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q-bio.QM2022★ 1 cited

Prognostic Significance of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images in Colorectal Cancers

Anran Liu, Xingyu Li, Hongyi Wu +4

Purpose Tumor-infiltrating lymphocytes (TILs) have significant prognostic values in cancers. However, very few automated, deep-learning-based TIL scoring algorithms have been devel…

q-bio.QM2022★ 35 cited

Predicting microsatellite instability and key biomarkers in colorectal cancer from H&E-stained images: Achieving SOTA predictive performance with fewer data using Swin Transformer

Bangwei Guo, Xingyu Li, Jitendra Jonnagaddala +2

Artificial intelligence (AI) models have been developed for predicting clinically relevant biomarkers, including microsatellite instability (MSI), for colorectal cancers (CRC). How…

q-bio.QM2022

A robust and lightweight deep attention multiple instance learning algorithm for predicting genetic alterations

Bangwei Guo, Xingyu Li, Miaomiao Yang +2

Deep-learning models based on whole-slide digital pathology images (WSIs) become increasingly popular for predicting molecular biomarkers. Instance-based models has been the mainst…

q-bio.QM2022★ 2 cited

Optimize Deep Learning Models for Prediction of Gene Mutations Using Unsupervised Clustering

Zihan Chen, Xingyu Li, Miaomiao Yang +2

Deep learning has become the mainstream methodological choice for analyzing and interpreting whole-slide digital pathology images (WSIs). It is commonly assumed that tumor regions…

q-bio.QM2022★ 3 cited

DePS: An improved deep learning model for de novo peptide sequencing

Cheng Ge, Yi Lu, Jia Qu +5

De novo peptide sequencing from mass spectrometry data is an important method for protein identification. Recently, various deep learning approaches were applied for de novo peptid…