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q-bio.MN2023★ 2 cited
PROSO Toolbox: a unified protein-constrained genome-scale modelling framework for strain designing and optimization
Haoyang Yao, Laurence Yang
The genome-scale metabolic model with protein constraint (PC-model) has been increasingly popular for microbial metabolic simulations. We present PROSO Toolbox, a unified and simpl…
q-bio.MN2016
Reliable and efficient solution of genome-scale models of Metabolism and macromolecular Expression
Ding Ma, Laurence Yang, Ronan M. T. Fleming +3
Constraint-Based Reconstruction and Analysis (COBRA) is currently the only methodology that permits integrated modeling of Metabolism and macromolecular Expression (ME) at genome-s…