30 citations · 75 across the 9 of their papers we have counts for
4 papers · 1 filter
Massive Multi-Omics Microbiome Database (M3DB): A Scalable Data Warehouse and Analytics Platform for Microbiome Datasets
Shaun W. Norris, Steven P. Bradley, Hardik I. Parikh +1
Massive Multi-Omics Microbiome Database (M3DB) is a data warehousing and analytics solution designed to handle diverse, complex, and unprecedented volumes of sequence and taxonomic…
MEEPTOOLS: A maximum expected error based FASTQ read filtering and trimming toolkit
Vishal N. Koparde, Hardik I. Parikh, Steven P. Bradley +1
Next generation sequencing technology rapidly produces massive volume of data and quality control of this sequencing data is essential to any genomic analysis. Here we present MEEP…
MeFiT: Merging and Filtering Tool for Illumina Paired-End Reads for 16S rRNA Amplicon Sequencing
Hardik I. Parikh, Vishal N. Koparde, Steven P. Bradley +2
Recent advances in next-generation sequencing have revolutionized genomic research. 16S rRNA amplicon sequencing using paired-end sequencing on the MiSeq platform from Illumina, In…
Dynamical System Modeling to Simulate Donor T Cell Response to Whole Exome Sequencing-Derived Recipient Peptides Demonstrates Different Alloreactivity Potential In HLA-Matched and Mismatched Donor-Recipient Pairs
B. Abdul Razzaq, A. Scalora, V. Koparde +14
Stem cell transplants may be considered as dynamical systems to allow sequence differences across the exomes of the transplant donors and recipients to be used to simulate an allor…