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20202026
most citedBeyond Homophily in Graph Neural Networks: Current Limitations and Effective Designs

171 citations · 248 across the 20 of their papers we have counts for

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13 papers · 1 filter

cs.LG2026

Unveiling Multi-regime Patterns in SciML: Distinct Failure Modes and Regime-specific Optimization

Yuxin Wang, Yuanzhe Hu, Xiaokun Zhong +7

Neural networks trained under different hyperparameter settings can fall into distinct training "regimes," with consistent behavior within regimes and qualitative differences acros…

cs.LG2025★ 4 cited

Non-exchangeable Conformal Prediction for Temporal Graph Neural Networks

Tuo Wang, Jian Kang, Yujun Yan +2

Conformal prediction for graph neural networks (GNNs) offers a promising framework for quantifying uncertainty, enhancing GNN reliability in high-stakes applications. However, exis…

cs.LG2025

Spectral Insights into Data-Oblivious Critical Layers in Large Language Models

Xuyuan Liu, Lei Hsiung, Yaoqing Yang +1

Understanding how feature representations evolve across layers in large language models (LLMs) is key to improving their interpretability and robustness. While recent studies have…

cs.LG2024

Exploring Consistency in Graph Representations:from Graph Kernels to Graph Neural Networks

Xuyuan Liu, Yinghao Cai, Qihui Yang +1

Graph Neural Networks (GNNs) have emerged as a dominant approach in graph representation learning, yet they often struggle to capture consistent similarity relationships among grap…

cs.LG2024★ 1 cited

Enhancing Size Generalization in Graph Neural Networks through Disentangled Representation Learning

Zheng Huang, Qihui Yang, Dawei Zhou +1

Although most graph neural networks (GNNs) can operate on graphs of any size, their classification performance often declines on graphs larger than those encountered during trainin…

cs.LG2023★ 9 cited

Interpretable Sparsification of Brain Graphs: Better Practices and Effective Designs for Graph Neural Networks

Gaotang Li, Marlena Duda, Xiang Zhang +2

Brain graphs, which model the structural and functional relationships between brain regions, are crucial in neuroscientific and clinical applications involving graph classification…

cs.LG2023

Tackling Size Generalization of Graph Neural Networks on Biological Data from a Spectral Perspective

Gaotang Li, Danai Koutra, Yujun Yan

We address the key challenge of size-induced distribution shifts in graph neural networks (GNNs) and their impact on the generalization of GNNs to larger graphs. Existing literatur…

cs.LG2023

EvoluNet: Advancing Dynamic Non-IID Transfer Learning on Graphs

Haohui Wang, Yuzhen Mao, Yujun Yan +8

Non-IID transfer learning on graphs is crucial in many high-stakes domains. The majority of existing works assume stationary distribution for both source and target domains. Howeve…

cs.LG2021

Augmentations in Graph Contrastive Learning: Current Methodological Flaws & Towards Better Practices

Puja Trivedi, Ekdeep Singh Lubana, Yujun Yan +2

Unsupervised graph representation learning is critical to a wide range of applications where labels may be scarce or expensive to procure. Contrastive learning (CL) is an increasin…

cs.LG2021★ 24 cited

Two Sides of the Same Coin: Heterophily and Oversmoothing in Graph Convolutional Neural Networks

Yujun Yan, Milad Hashemi, Kevin Swersky +2

In node classification tasks, graph convolutional neural networks (GCNs) have demonstrated competitive performance over traditional methods on diverse graph data. However, it is kn…

cs.LG2020★ 16 cited

Improving Semi-supervised Federated Learning by Reducing the Gradient Diversity of Models

Zhengming Zhang, Yaoqing Yang, Zhewei Yao +3

Federated learning (FL) is a promising way to use the computing power of mobile devices while maintaining the privacy of users. Current work in FL, however, makes the unrealistic a…

cs.LG2020★ 171 cited

Beyond Homophily in Graph Neural Networks: Current Limitations and Effective Designs

Jiong Zhu, Yujun Yan, Lingxiao Zhao +3

We investigate the representation power of graph neural networks in the semi-supervised node classification task under heterophily or low homophily, i.e., in networks where connect…

cs.LG2020★ 7 cited

Neural Execution Engines: Learning to Execute Subroutines

Yujun Yan, Kevin Swersky, Danai Koutra +2

A significant effort has been made to train neural networks that replicate algorithmic reasoning, but they often fail to learn the abstract concepts underlying these algorithms. Th…