activity
20202026
most citedBeyond Homophily in Graph Neural Networks: Current Limitations and Effective Designs

171 citations · 248 across the 20 of their papers we have counts for

collaborators

20 papers

cs.LG2026

Unveiling Multi-regime Patterns in SciML: Distinct Failure Modes and Regime-specific Optimization

Yuxin Wang, Yuanzhe Hu, Xiaokun Zhong +7

Neural networks trained under different hyperparameter settings can fall into distinct training "regimes," with consistent behavior within regimes and qualitative differences acros…

cs.CL2025

GENUINE: Graph Enhanced Multi-level Uncertainty Estimation for Large Language Models

Tuo Wang, Adithya Kulkarni, Tyler Cody +3

Uncertainty estimation is essential for enhancing the reliability of Large Language Models (LLMs), particularly in high-stakes applications. Existing methods often overlook semanti…

cs.LG2025★ 4 cited

Non-exchangeable Conformal Prediction for Temporal Graph Neural Networks

Tuo Wang, Jian Kang, Yujun Yan +2

Conformal prediction for graph neural networks (GNNs) offers a promising framework for quantifying uncertainty, enhancing GNN reliability in high-stakes applications. However, exis…

cs.LG2025

Spectral Insights into Data-Oblivious Critical Layers in Large Language Models

Xuyuan Liu, Lei Hsiung, Yaoqing Yang +1

Understanding how feature representations evolve across layers in large language models (LLMs) is key to improving their interpretability and robustness. While recent studies have…

cs.AI2025

Judging with Many Minds: Do More Perspectives Mean Less Prejudice? On Bias Amplifications and Resistance in Multi-Agent Based LLM-as-Judge

Chiyu Ma, Enpei Zhang, Yilun Zhao +7

LLM-as-Judge has emerged as a scalable alternative to human evaluation, enabling large language models (LLMs) to provide reward signals in trainings. While recent work has explored…

stat.ME2025

Transfer Faster, Price Smarter: Minimax Dynamic Pricing under Cross-Market Preference Shift

Yi Zhang, Elynn Chen, Yujun Yan

We study contextual dynamic pricing when a target market can leverage K auxiliary markets -- offline logs or concurrent streams -- whose mean utilities differ by a structured prefe…

q-bio.NC2025

MindLLM: A Subject-Agnostic and Versatile Model for fMRI-to-Text Decoding

Weikang Qiu, Zheng Huang, Haoyu Hu +3

Decoding functional magnetic resonance imaging (fMRI) signals into text has been a key challenge in the neuroscience community, with the potential to advance brain-computer interfa…

cs.LG2024

Exploring Consistency in Graph Representations:from Graph Kernels to Graph Neural Networks

Xuyuan Liu, Yinghao Cai, Qihui Yang +1

Graph Neural Networks (GNNs) have emerged as a dominant approach in graph representation learning, yet they often struggle to capture consistent similarity relationships among grap…

stat.ML2024

Sharpness-diversity tradeoff: improving flat ensembles with SharpBalance

Haiquan Lu, Xiaotian Liu, Yefan Zhou +6

Recent studies on deep ensembles have identified the sharpness of the local minima of individual learners and the diversity of the ensemble members as key factors in improving test…

cs.LG2024★ 1 cited

Enhancing Size Generalization in Graph Neural Networks through Disentangled Representation Learning

Zheng Huang, Qihui Yang, Dawei Zhou +1

Although most graph neural networks (GNNs) can operate on graphs of any size, their classification performance often declines on graphs larger than those encountered during trainin…

eess.SP2024★ 16 cited

Medformer: A Multi-Granularity Patching Transformer for Medical Time-Series Classification

Yihe Wang, Nan Huang, Taida Li +2

Medical time series (MedTS) data, such as Electroencephalography (EEG) and Electrocardiography (ECG), play a crucial role in healthcare, such as diagnosing brain and heart diseases…

cs.LG2023★ 9 cited

Interpretable Sparsification of Brain Graphs: Better Practices and Effective Designs for Graph Neural Networks

Gaotang Li, Marlena Duda, Xiang Zhang +2

Brain graphs, which model the structural and functional relationships between brain regions, are crucial in neuroscientific and clinical applications involving graph classification…

cs.LG2023

Tackling Size Generalization of Graph Neural Networks on Biological Data from a Spectral Perspective

Gaotang Li, Danai Koutra, Yujun Yan

We address the key challenge of size-induced distribution shifts in graph neural networks (GNNs) and their impact on the generalization of GNNs to larger graphs. Existing literatur…

cs.LG2023

EvoluNet: Advancing Dynamic Non-IID Transfer Learning on Graphs

Haohui Wang, Yuzhen Mao, Yujun Yan +8

Non-IID transfer learning on graphs is crucial in many high-stakes domains. The majority of existing works assume stationary distribution for both source and target domains. Howeve…

cs.CV2021

A Dataset-Dispersion Perspective on Reconstruction Versus Recognition in Single-View 3D Reconstruction Networks

Yefan Zhou, Yiru Shen, Yujun Yan +2

Neural networks (NN) for single-view 3D reconstruction (SVR) have gained in popularity. Recent work points out that for SVR, most cutting-edge NNs have limited performance on recon…

cs.LG2021

Augmentations in Graph Contrastive Learning: Current Methodological Flaws & Towards Better Practices

Puja Trivedi, Ekdeep Singh Lubana, Yujun Yan +2

Unsupervised graph representation learning is critical to a wide range of applications where labels may be scarce or expensive to procure. Contrastive learning (CL) is an increasin…

cs.LG2021★ 24 cited

Two Sides of the Same Coin: Heterophily and Oversmoothing in Graph Convolutional Neural Networks

Yujun Yan, Milad Hashemi, Kevin Swersky +2

In node classification tasks, graph convolutional neural networks (GCNs) have demonstrated competitive performance over traditional methods on diverse graph data. However, it is kn…

cs.LG2020★ 16 cited

Improving Semi-supervised Federated Learning by Reducing the Gradient Diversity of Models

Zhengming Zhang, Yaoqing Yang, Zhewei Yao +3

Federated learning (FL) is a promising way to use the computing power of mobile devices while maintaining the privacy of users. Current work in FL, however, makes the unrealistic a…

cs.LG2020★ 171 cited

Beyond Homophily in Graph Neural Networks: Current Limitations and Effective Designs

Jiong Zhu, Yujun Yan, Lingxiao Zhao +3

We investigate the representation power of graph neural networks in the semi-supervised node classification task under heterophily or low homophily, i.e., in networks where connect…

cs.LG2020★ 7 cited

Neural Execution Engines: Learning to Execute Subroutines

Yujun Yan, Kevin Swersky, Danai Koutra +2

A significant effort has been made to train neural networks that replicate algorithmic reasoning, but they often fail to learn the abstract concepts underlying these algorithms. Th…