activity
20202022
most citedGraphVAMPNet, using graph neural networks and variational approach to markov processes for dynamical modeling of biomolecules

56 citations · 56 across the 5 of their papers we have counts for

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Showing 2021Show all

2 papers · 1 filter

cs.DB2021

Fine-Tuning Data Structures for Analytical Query Processing

Amir Shaikhha, Marios Kelepeshis, Mahdi Ghorbani

We introduce a framework for automatically choosing data structures to support efficient computation of analytical workloads. Our contributions are twofold. First, we introduce a n…

q-bio.BM2021

Variational embedding of protein folding simulations using gaussian mixture variational autoencoders

Mahdi Ghorbani, Samarjeet Prasad, Jeffery B. Klauda +1

Conformational sampling of biomolecules using molecular dynamics simulations often produces large amount of high dimensional data that makes it difficult to interpret using convent…