56 citations · 56 across the 5 of their papers we have counts for
6 papers
Compiling Structured Tensor Algebra
Mahdi Ghorbani, Mathieu Huot, Shideh Hashemian +1
Tensor algebra is essential for data-intensive workloads in various computational domains. Computational scientists face a trade-off between the specialization degree provided by d…
Hinted Dictionaries: Efficient Functional Ordered Sets and Maps
Amir Shaikhha, Mahdi Ghorbani, Hesam Shahrokhi
This article introduces hinted dictionaries for expressing efficient ordered sets and maps functionally. As opposed to the traditional ordered dictionaries with logarithmic operati…
GraphVAMPNet, using graph neural networks and variational approach to markov processes for dynamical modeling of biomolecules
Mahdi Ghorbani, Samarjeet Prasad, Jeffery B. Klauda +1
Finding low dimensional representation of data from long-timescale trajectories of biomolecular processes such as protein-folding or ligand-receptor binding is of fundamental impor…
Fine-Tuning Data Structures for Analytical Query Processing
Amir Shaikhha, Marios Kelepeshis, Mahdi Ghorbani
We introduce a framework for automatically choosing data structures to support efficient computation of analytical workloads. Our contributions are twofold. First, we introduce a n…
Variational embedding of protein folding simulations using gaussian mixture variational autoencoders
Mahdi Ghorbani, Samarjeet Prasad, Jeffery B. Klauda +1
Conformational sampling of biomolecules using molecular dynamics simulations often produces large amount of high dimensional data that makes it difficult to interpret using convent…
Be Your Own Best Competitor! Multi-Branched Adversarial Knowledge Transfer
Mahdi Ghorbani, Fahimeh Fooladgar, Shohreh Kasaei
Deep neural network architectures have attained remarkable improvements in scene understanding tasks. Utilizing an efficient model is one of the most important constraints for limi…