97 citations · 133 across the 38 of their papers we have counts for
18 papers · 1 filter
Multipath cycleGAN for harmonization of paired and unpaired low-dose lung computed tomography reconstruction kernels
Aravind R. Krishnan, Thomas Z. Li, Lucas W. Remedios +12
Reconstruction kernels in computed tomography (CT) affect spatial resolution and noise characteristics, introducing systematic variability in quantitative imaging measurements such…
Enhancing Single-Slice Segmentation with 3D-to-2D Unpaired Scan Distillation
Xin Yu, Qi Yang, Han Liu +10
2D single-slice abdominal computed tomography (CT) enables the assessment of body habitus and organ health with low radiation exposure. However, single-slice data necessitates the…
Data-driven Nucleus Subclassification on Colon H&E using Style-transferred Digital Pathology
Lucas W. Remedios, Shunxing Bao, Samuel W. Remedios +16
Understanding the way cells communicate, co-locate, and interrelate is essential to furthering our understanding of how the body functions. H&E is widely available, however, cell s…
HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis
Ruining Deng, Quan Liu, Can Cui +10
Panoramic image segmentation in computational pathology presents a remarkable challenge due to the morphologically complex and variably scaled anatomy. For instance, the intricate…
Super-resolution multi-contrast unbiased eye atlases with deep probabilistic refinement
Ho Hin Lee, Adam M. Saunders, Michael E. Kim +15
Purpose: Eye morphology varies significantly across the population, especially for the orbit and optic nerve. These variations limit the feasibility and robustness of generalizing…
Deep conditional generative models for longitudinal single-slice abdominal computed tomography harmonization
Xin Yu, Qi Yang, Yucheng Tang +8
Two-dimensional single-slice abdominal computed tomography (CT) provides a detailed tissue map with high resolution allowing quantitative characterization of relationships between…
Evaluation Kidney Layer Segmentation on Whole Slide Imaging using Convolutional Neural Networks and Transformers
Muhao Liu, Chenyang Qi, Shunxing Bao +6
The segmentation of kidney layer structures, including cortex, outer stripe, inner stripe, and inner medulla within human kidney whole slide images (WSI) plays an essential role in…
Inter-vendor harmonization of Computed Tomography (CT) reconstruction kernels using unpaired image translation
Aravind R. Krishnan, Kaiwen Xu, Thomas Li +9
The reconstruction kernel in computed tomography (CT) generation determines the texture of the image. Consistency in reconstruction kernels is important as the underlying CT textur…
Enhancing Hierarchical Transformers for Whole Brain Segmentation with Intracranial Measurements Integration
Xin Yu, Yucheng Tang, Qi Yang +4
Whole brain segmentation with magnetic resonance imaging (MRI) enables the non-invasive measurement of brain regions, including total intracranial volume (TICV) and posterior fossa…
High-performance Data Management for Whole Slide Image Analysis in Digital Pathology
Haoju Leng, Ruining Deng, Shunxing Bao +8
When dealing with giga-pixel digital pathology in whole-slide imaging, a notable proportion of data records holds relevance during each analysis operation. For instance, when deplo…
Leverage Weakly Annotation to Pixel-wise Annotation via Zero-shot Segment Anything Model for Molecular-empowered Learning
Xueyuan Li, Ruining Deng, Yucheng Tang +3
Precise identification of multiple cell classes in high-resolution Giga-pixel whole slide imaging (WSI) is critical for various clinical scenarios. Building an AI model for this pu…
Multi-scale Multi-site Renal Microvascular Structures Segmentation for Whole Slide Imaging in Renal Pathology
Franklin Hu, Ruining Deng, Shunxing Bao +2
Segmentation of microvascular structures, such as arterioles, venules, and capillaries, from human kidney whole slide images (WSI) has become a focal point in renal pathology. Curr…
Multi-Contrast Computed Tomography Atlas of Healthy Pancreas
Yinchi Zhou, Ho Hin Lee, Yucheng Tang +6
With the substantial diversity in population demographics, such as differences in age and body composition, the volumetric morphology of pancreas varies greatly, resulting in disti…
Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging
Ruining Deng, Can Cui, Quan Liu +13
The segment anything model (SAM) was released as a foundation model for image segmentation. The promptable segmentation model was trained by over 1 billion masks on 11M licensed an…
Cross-scale Multi-instance Learning for Pathological Image Diagnosis
Ruining Deng, Can Cui, Lucas W. Remedios +12
Analyzing high resolution whole slide images (WSIs) with regard to information across multiple scales poses a significant challenge in digital pathology. Multi-instance learning (M…
Scaling Up 3D Kernels with Bayesian Frequency Re-parameterization for Medical Image Segmentation
Ho Hin Lee, Quan Liu, Shunxing Bao +7
With the inspiration of vision transformers, the concept of depth-wise convolution revisits to provide a large Effective Receptive Field (ERF) using Large Kernel (LK) sizes for med…
UNesT: Local Spatial Representation Learning with Hierarchical Transformer for Efficient Medical Segmentation
Xin Yu, Qi Yang, Yinchi Zhou +12
Transformer-based models, capable of learning better global dependencies, have recently demonstrated exceptional representation learning capabilities in computer vision and medical…
Multi-Contrast Computed Tomography Healthy Kidney Atlas
Ho Hin Lee, Yucheng Tang, Kaiwen Xu +8
The construction of three-dimensional multi-modal tissue maps provides an opportunity to spur interdisciplinary innovations across temporal and spatial scales through information i…