97 citations · 133 across the 38 of their papers we have counts for
38 papers
Fine-grained Multi-class Nuclei Segmentation with Molecular-empowered All-in-SAM Model
Xueyuan Li, Can Cui, Ruining Deng +7
Purpose: Recent developments in computational pathology have been driven by advances in Vision Foundation Models, particularly the Segment Anything Model (SAM). This model facilita…
Lifespan Pancreas Morphology for Control vs Type 2 Diabetes using AI on Largescale Clinical Imaging
Lucas W. Remedios, Chloe Cho, Trent M. Schwartz +11
Purpose: Understanding how the pancreas changes is critical for detecting deviations in type 2 diabetes and other pancreatic disease. We measure pancreas size and shape using morph…
Data-Driven Abdominal Phenotypes of Type 2 Diabetes in Lean, Overweight, and Obese Cohorts
Lucas W. Remedios, Chloe Cho, Trent M. Schwartz +10
Purpose: Although elevated BMI is a well-known risk factor for type 2 diabetes, the disease's presence in some lean adults and absence in others with obesity suggests that detailed…
Multipath cycleGAN for harmonization of paired and unpaired low-dose lung computed tomography reconstruction kernels
Aravind R. Krishnan, Thomas Z. Li, Lucas W. Remedios +12
Reconstruction kernels in computed tomography (CT) affect spatial resolution and noise characteristics, introducing systematic variability in quantitative imaging measurements such…
Spatially-Adaptive Gradient Re-parameterization for 3D Large Kernel Optimization
Ho Hin Lee, Quan Liu, Shunxing Bao +2
Large kernel convolutions offer a scalable alternative to vision transformers for high-resolution 3D volumetric analysis, yet naively increasing kernel size often leads to optimiza…
Enhanced Feature-based Image Stitching for Endoscopic Videos in Pediatric Eosinophilic Esophagitis
Juming Xiong, Muyang Li, Ruining Deng +5
Video endoscopy represents a major advance in the investigation of gastrointestinal diseases. Reviewing endoscopy videos often involves frequent adjustments and reorientations to p…
Robust Body Composition Analysis by Generating 3D CT Volumes from Limited 2D Slices
Lianrui Zuo, Xin Yu, Dingjie Su +7
Body composition analysis provides valuable insights into aging, disease progression, and overall health conditions. Due to concerns of radiation exposure, two-dimensional (2D) sin…
Beyond the Lungs: Extending the Field of View in Chest CT with Latent Diffusion Models
Lianrui Zuo, Kaiwen Xu, Dingjie Su +8
The interconnection between the human lungs and other organs, such as the liver and kidneys, is crucial for understanding the underlying risks and effects of lung diseases and impr…
Brain age identification from diffusion MRI synergistically predicts neurodegenerative disease
Chenyu Gao, Michael E. Kim, Karthik Ramadass +27
Estimated brain age from magnetic resonance image (MRI) and its deviation from chronological age can provide early insights into potential neurodegenerative diseases, supporting ea…
Scalable quality control on processing of large diffusion-weighted and structural magnetic resonance imaging datasets
Michael E. Kim, Chenyu Gao, Karthik Ramadass +16
Proper quality control (QC) is time consuming when working with large-scale medical imaging datasets, yet necessary, as poor-quality data can lead to erroneous conclusions or poorl…
Influence of Early through Late Fusion on Pancreas Segmentation from Imperfectly Registered Multimodal MRI
Lucas W. Remedios, Han Liu, Samuel W. Remedios +7
Multimodal fusion promises better pancreas segmentation. However, where to perform fusion in models is still an open question. It is unclear if there is a best location to fuse inf…
Multi-Modality Conditioned Variational U-Net for Field-of-View Extension in Brain Diffusion MRI
Zhiyuan Li, Chenyu Gao, Praitayini Kanakaraj +13
An incomplete field-of-view (FOV) in diffusion magnetic resonance imaging (dMRI) can severely hinder the volumetric and bundle analyses of whole-brain white matter connectivity. Al…
Scalable, reproducible, and cost-effective processing of large-scale medical imaging datasets
Michael E. Kim, Karthik Ramadass, Chenyu Gao +11
Curating, processing, and combining large-scale medical imaging datasets from national studies is a non-trivial task due to the intense computation and data throughput required, va…
Persistence Image from 3D Medical Image: Superpixel and Optimized Gaussian Coefficient
Yanfan Zhu, Yash Singh, Khaled Younis +2
Topological data analysis (TDA) uncovers crucial properties of objects in medical imaging. Methods based on persistent homology have demonstrated their advantages in capturing topo…
Enhancing Single-Slice Segmentation with 3D-to-2D Unpaired Scan Distillation
Xin Yu, Qi Yang, Han Liu +10
2D single-slice abdominal computed tomography (CT) enables the assessment of body habitus and organ health with low radiation exposure. However, single-slice data necessitates the…
Data-driven Nucleus Subclassification on Colon H&E using Style-transferred Digital Pathology
Lucas W. Remedios, Shunxing Bao, Samuel W. Remedios +16
Understanding the way cells communicate, co-locate, and interrelate is essential to furthering our understanding of how the body functions. H&E is widely available, however, cell s…
HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis
Ruining Deng, Quan Liu, Can Cui +10
Panoramic image segmentation in computational pathology presents a remarkable challenge due to the morphologically complex and variably scaled anatomy. For instance, the intricate…
Field-of-View Extension for Brain Diffusion MRI via Deep Generative Models
Chenyu Gao, Shunxing Bao, Michael Kim +13
Purpose: In diffusion MRI (dMRI), the volumetric and bundle analyses of whole-brain tissue microstructure and connectivity can be severely impeded by an incomplete field-of-view (F…
Nucleus subtype classification using inter-modality learning
Lucas W. Remedios, Shunxing Bao, Samuel W. Remedios +14
Understanding the way cells communicate, co-locate, and interrelate is essential to understanding human physiology. Hematoxylin and eosin (H&E) staining is ubiquitously available b…
Super-resolution multi-contrast unbiased eye atlases with deep probabilistic refinement
Ho Hin Lee, Adam M. Saunders, Michael E. Kim +15
Purpose: Eye morphology varies significantly across the population, especially for the orbit and optic nerve. These variations limit the feasibility and robustness of generalizing…
DeformUX-Net: Exploring a 3D Foundation Backbone for Medical Image Segmentation with Depthwise Deformable Convolution
Ho Hin Lee, Quan Liu, Qi Yang +4
The application of 3D ViTs to medical image segmentation has seen remarkable strides, somewhat overshadowing the budding advancements in Convolutional Neural Network (CNN)-based mo…
Deep conditional generative models for longitudinal single-slice abdominal computed tomography harmonization
Xin Yu, Qi Yang, Yucheng Tang +8
Two-dimensional single-slice abdominal computed tomography (CT) provides a detailed tissue map with high resolution allowing quantitative characterization of relationships between…
Evaluation Kidney Layer Segmentation on Whole Slide Imaging using Convolutional Neural Networks and Transformers
Muhao Liu, Chenyang Qi, Shunxing Bao +6
The segmentation of kidney layer structures, including cortex, outer stripe, inner stripe, and inner medulla within human kidney whole slide images (WSI) plays an essential role in…
Inter-vendor harmonization of Computed Tomography (CT) reconstruction kernels using unpaired image translation
Aravind R. Krishnan, Kaiwen Xu, Thomas Li +9
The reconstruction kernel in computed tomography (CT) generation determines the texture of the image. Consistency in reconstruction kernels is important as the underlying CT textur…