3 papers
math.OC2019
Haplotype Assembly Using Manifold Optimization and Error Correction Mechanism
Mohamad Mahdi Mohades, Sina Majidian, Mohammad Hossein Kahaei
Recent matrix completion based methods have not been able to properly model the Haplotype Assembly Problem (HAP) for noisy observations. To cope with such a case, in this letter we…
eess.SP2018
Matrix Completion with Weighted Constraint for Haplotype Estimation
Sina Majidian, M. Mohades, M. H. Kahaei
A new optimization design is proposed for matrix completion by weighting the measurements and deriving the corresponding error bound. Accordingly, the Haplotype reconstruction usin…
q-bio.GN2018
Minimum error correction-based haplotype assembly: considerations for long read data
Sina Majidian, Mohammad Hossein Kahaei, Dick de Ridder
The single nucleotide polymorphism (SNP) is the most widely studied type of genetic variation. A haplotype is defined as the sequence of alleles at SNP sites on each haploid chromo…