Matrix Completion with Weighted Constraint for Haplotype Estimation

Abstract

A new optimization design is proposed for matrix completion by weighting the measurements and deriving the corresponding error bound. Accordingly, the Haplotype reconstruction using nuclear norm minimization with Weighted Constraint (HapWeC) is devised for haplotype estimation. Computer simulations show the outperformance of the HapWeC compared to some recent algorithms in terms of the normalized reconstruction error and reconstruction rate.

arXiv comment6 Pages, 4 Figures

References in corpus (5)

• Guaranteed Minimum-Rank Solutions of Linear Matrix Equations via Nuclear Norm Minimization
• An overview of low-rank matrix recovery from incomplete observations
• Matrix Completion-Based Channel Estimation for MmWave Communication Systems With Array-Inherent Impairments
• NGS Based Haplotype Assembly Using Matrix Completion
• Matrix Completion and Performance Guarantees for Single Individual Haplotyping