25 citations · 28 across the 7 of their papers we have counts for
Showing 2022 · cs.ARShow all
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cs.AR2022
A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems
Safaa Diab, Amir Nassereldine, Mohammed Alser +3
Sequence alignment is a memory bound computation whose performance in modern systems is limited by the memory bandwidth bottleneck. Processing-in-memory architectures alleviate thi…
cs.AR2022★ 2 cited
High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory
Safaa Diab, Amir Nassereldine, Mohammed Alser +3
We show that the wavefront algorithm can achieve higher pairwise read alignment throughput on a UPMEM PIM system than on a server-grade multi-threaded CPU system.