25 citations · 28 across the 7 of their papers we have counts for
4 papers · 1 filter
A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems
Safaa Diab, Amir Nassereldine, Mohammed Alser +3
Sequence alignment is a memory bound computation whose performance in modern systems is limited by the memory bandwidth bottleneck. Processing-in-memory architectures alleviate thi…
High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory
Safaa Diab, Amir Nassereldine, Mohammed Alser +3
We show that the wavefront algorithm can achieve higher pairwise read alignment throughput on a UPMEM PIM system than on a server-grade multi-threaded CPU system.
Parallel Vertex Cover Algorithms on GPUs
Peter Yamout, Karim Barada, Adnan Jaljuli +2
Finding small vertex covers in a graph has applications in numerous domains. Two common formulations of the problem include: Minimum Vertex Cover, which finds the smallest vertex c…
A Compiler Framework for Optimizing Dynamic Parallelism on GPUs
Mhd Ghaith Olabi, Juan Gómez Luna, Onur Mutlu +2
Dynamic parallelism on GPUs allows GPU threads to dynamically launch other GPU threads. It is useful in applications with nested parallelism, particularly where the amount of neste…