2 papers
cs.CE2019
Communication-Efficient Jaccard Similarity for High-Performance Distributed Genome Comparisons
Maciej Besta, Raghavendra Kanakagiri, Harun Mustafa +4
The Jaccard similarity index is an important measure of the overlap of two sets, widely used in machine learning, computational genomics, information retrieval, and many other area…
q-bio.GN2019
META: Memory-efficient taxonomic classification and abundance estimation for metagenomics with deep learning
Andreas Georgiou, Vincent Fortuin, Harun Mustafa +1
Metagenomic studies have increasingly utilized sequencing technologies in order to analyze DNA fragments found in environmental samples.One important step in this analysis is the t…