activity
20182025
most citedBioBERT: a pre-trained biomedical language representation model for biomedical text mining

7.5k citations · 7.7k across the 12 of their papers we have counts for

collaborators

12 papers

cs.CL2025

Using tournaments to calculate AUROC for zero-shot classification with LLMs

WonJin Yoon, Ian Bulovic, Timothy A. Miller

Large language models perform surprisingly well on many zero-shot classification tasks, but are difficult to fairly compare to supervised classifiers due to the lack of a modifiabl…

cs.CL2025★ 1 cited

Aspect-Oriented Summarization for Psychiatric Short-Term Readmission Prediction

WonJin Yoon, Boyu Ren, Spencer Thomas +4

Recent progress in large language models (LLMs) has enabled the automated processing of lengthy documents even without supervised training on a task-specific dataset. Yet, their ze…

cs.CL2022

Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework

Wonjin Yoon, Richard Jackson, Elliot Ford +2

In order to assist the drug discovery/development process, pharmaceutical companies often apply biomedical NER and linking techniques over internal and public corpora. Decades of s…

cs.CL2021★ 5 cited

Improving Tagging Consistency and Entity Coverage for Chemical Identification in Full-text Articles

Hyunjae Kim, Mujeen Sung, Wonjin Yoon +2

This paper is a technical report on our system submitted to the chemical identification task of the BioCreative VII Track 2 challenge. The main feature of this challenge is that th…

cs.CL2021★ 24 cited

Sequence tagging for biomedical extractive question answering

Wonjin Yoon, Richard Jackson, Aron Lagerberg +1

Current studies in extractive question answering (EQA) have modeled the single-span extraction setting, where a single answer span is a label to predict for a given question-passag…

cs.DL2020★ 51 cited

Pandemics are catalysts of scientific novelty: Evidence from COVID-19

Meijun Liu, Yi Bu, Chongyan Chen +14

Scientific novelty drives the efforts to invent new vaccines and solutions during the pandemic. First-time collaboration and international collaboration are two pivotal channels to…