390 citations · 1.1k across the 61 of their papers we have counts for
18 papers · 1 filter
BraTS orchestrator : Democratizing and Disseminating state-of-the-art brain tumor image analysis
Florian Kofler, Marcel Rosier, Mehdi Astaraki +34
The Brain Tumor Segmentation (BraTS) cluster of challenges has significantly advanced brain tumor image analysis by providing large, curated datasets and addressing clinically rele…
BraTS-PEDs: Results of the Multi-Consortium International Pediatric Brain Tumor Segmentation Challenge 2023
Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu +77
Pediatric central nervous system tumors are the leading cause of cancer-related deaths in children. The five-year survival rate for high-grade glioma in children is less than 20%.…
QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge
Hongwei Bran Li, Fernando Navarro, Ivan Ezhov +77
Uncertainty in medical image segmentation tasks, especially inter-rater variability, arising from differences in interpretations and annotations by various experts, presents a sign…
Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge
Dominic LaBella, Ujjwal Baid, Omaditya Khanna +119
We describe the design and results from the BraTS 2023 Intracranial Meningioma Segmentation Challenge. The BraTS Meningioma Challenge differed from prior BraTS Glioma challenges in…
A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge
Ezequiel de la Rosa, Mauricio Reyes, Sook-Lei Liew +55
Diffusion-weighted MRI (DWI) is essential for stroke diagnosis, treatment decisions, and prognosis. However, image and disease variability hinder the development of generalizable A…
Framing image registration as a landmark detection problem for label-noise-aware task representation (HitR)
Diana Waldmannstetter, Ivan Ezhov, Benedikt Wiestler +16
Accurate image registration is pivotal in biomedical image analysis, where selecting suitable registration algorithms demands careful consideration. While numerous algorithms are a…
The Brain Tumor Segmentation (BraTS) Challenge 2023: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs)
Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu +70
Pediatric tumors of the central nervous system are the most common cause of cancer-related death in children. The five-year survival rate for high-grade gliomas in children is less…
The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)
Hongwei Bran Li, Gian Marco Conte, Qingqiao Hu +62
Automated brain tumor segmentation methods have become well-established and reached performance levels offering clear clinical utility. These methods typically rely on four input m…
The Brain Tumor Segmentation (BraTS) Challenge: Local Synthesis of Healthy Brain Tissue via Inpainting
Florian Kofler, Felix Meissen, Felix Steinbauer +103
A myriad of algorithms for the automatic analysis of brain MR images is available to support clinicians in their decision-making. For brain tumor patients, the image acquisition ti…
Primitive Simultaneous Optimization of Similarity Metrics for Image Registration
Diana Waldmannstetter, Benedikt Wiestler, Julian Schwarting +11
Even though simultaneous optimization of similarity metrics is a standard procedure in the field of semantic segmentation, surprisingly, this is much less established for image reg…
Clustering disease trajectories in contrastive feature space for biomarker discovery in age-related macular degeneration
Robbie Holland, Oliver Leingang, Christopher Holmes +13
Age-related macular degeneration (AMD) is the leading cause of blindness in the elderly. Current grading systems based on imaging biomarkers only coarsely group disease stages into…
Automated analysis of diabetic retinopathy using vessel segmentation maps as inductive bias
Linus Kreitner, Ivan Ezhov, Daniel Rueckert +2
Recent studies suggest that early stages of diabetic retinopathy (DR) can be diagnosed by monitoring vascular changes in the deep vascular complex. In this work, we investigate a n…
Generalized Wasserstein Dice Loss, Test-time Augmentation, and Transformers for the BraTS 2021 challenge
Lucas Fidon, Suprosanna Shit, Ivan Ezhov +3
Brain tumor segmentation from multiple Magnetic Resonance Imaging (MRI) modalities is a challenging task in medical image computation. The main challenges lie in the generalizabili…
METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy
Izabela Horvath, Johannes C. Paetzold, Oliver Schoppe +6
Novel multimodal imaging methods are capable of generating extensive, super high resolution datasets for preclinical research. Yet, a massive lack of annotations prevents the broad…
Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient
Florian Kofler, Ivan Ezhov, Fabian Isensee +16
Metrics optimized in complex machine learning tasks are often selected in an ad-hoc manner. It is unknown how they align with human expert perception. We explore the correlations b…
An automatic multi-tissue human fetal brain segmentation benchmark using the Fetal Tissue Annotation Dataset
Kelly Payette, Priscille de Dumast, Hamza Kebiri +17
It is critical to quantitatively analyse the developing human fetal brain in order to fully understand neurodevelopment in both normal fetuses and those with congenital disorders.…
A distance-based loss for smooth and continuous skin layer segmentation in optoacoustic images
Stefan Gerl, Johannes C. Paetzold, Hailong He +7
Raster-scan optoacoustic mesoscopy (RSOM) is a powerful, non-invasive optical imaging technique for functional, anatomical, and molecular skin and tissue analysis. However, both th…
Red-GAN: Attacking class imbalance via conditioned generation. Yet another perspective on medical image synthesis for skin lesion dermoscopy and brain tumor MRI
Ahmad B Qasim, Ivan Ezhov, Suprosanna Shit +7
Exploiting learning algorithms under scarce data regimes is a limitation and a reality of the medical imaging field. In an attempt to mitigate the problem, we propose a data augmen…