390 citations · 1.1k across the 61 of their papers we have counts for
63 papers
A Physics-Guided Neural Framework for Rheology Measurement from Dynamical Laser Speckles
Titanliang Wang, Thomas Goudoulas, Ehsan Fattahi +7
Critical breakthroughs in the area of biomedicine and materials science increasingly depend on rapid, non-contact methods for viscoelastic characterization. Laser Speckle Rheology…
The MICCAI Federated Tumor Segmentation (FeTS) Challenge 2024: Efficient and Robust Aggregation Methods for Federated Learning
Akis Linardos, Sarthak Pati, Ujjwal Baid +25
We present the design and results of the MICCAI Federated Tumor Segmentation (FeTS) Challenge 2024, which focuses on federated learning (FL) for glioma sub-region segmentation in m…
Addressing Annotation Scarcity in Hyperspectral Brain Image Segmentation with Unsupervised Domain Adaptation
Tim Mach, Daniel Rueckert, Alex Berger +2
This work presents a novel deep learning framework for segmenting cerebral vasculature in hyperspectral brain images. We address the critical challenge of severe label scarcity, wh…
From Fiber Tracts to Tumor Spread: Biophysical Modeling of Butterfly Glioma Growth Using Diffusion Tensor Imaging
Jonas Weidner, Ivan Ezhov, Michal Balcerak +5
Butterfly tumors are a distinct class of gliomas that span the corpus callosum, producing a characteristic butterfly-shaped appearance on MRI. The distinctive growth pattern of the…
BrainLesion Suite: A Flexible and User-Friendly Framework for Modular Brain Lesion Image Analysis
Florian Kofler, Marcel Rosier, Mehdi Astaraki +26
BrainLesion Suite is a versatile toolkit for building modular brain lesion image analysis pipelines in Python. Following Pythonic principles, BrainLesion Suite is designed to provi…
BraTS orchestrator : Democratizing and Disseminating state-of-the-art brain tumor image analysis
Florian Kofler, Marcel Rosier, Mehdi Astaraki +34
The Brain Tumor Segmentation (BraTS) cluster of challenges has significantly advanced brain tumor image analysis by providing large, curated datasets and addressing clinically rele…
Analysis of the MICCAI Brain Tumor Segmentation -- Metastases (BraTS-METS) 2025 Lighthouse Challenge: Brain Metastasis Segmentation on Pre- and Post-treatment MRI
Nazanin Maleki, Raisa Amiruddin, Ahmed W. Moawad +240
Despite continuous advancements in cancer treatment, brain metastatic disease remains a significant complication of primary cancer and is associated with an unfavorable prognosis.…
Efficient Deep Learning-based Forward Solvers for Brain Tumor Growth Models
Zeineb Haouari, Jonas Weidner, Yeray Martin-Ruisanchez +5
Glioblastoma, a highly aggressive brain tumor, poses major challenges due to its poor prognosis and high morbidity rates. Partial differential equation-based models offer promising…
A Lightweight Optimization Framework for Estimating 3D Brain Tumor Infiltration
Jonas Weidner, Michal Balcerak, Ivan Ezhov +6
Glioblastoma, the most aggressive primary brain tumor, poses a severe clinical challenge due to its diffuse microscopic infiltration, which remains largely undetected on standard M…
FedPID: An Aggregation Method for Federated Learning
Leon Mächler, Gustav Grimberg, Ivan Ezhov +4
This paper presents FedPID, our submission to the Federated Tumor Segmentation Challenge 2024 (FETS24). Inspired by FedCostWAvg and FedPIDAvg, our winning contributions to FETS21 a…
Physics-Regularized Multi-Modal Image Assimilation for Brain Tumor Localization
Michal Balcerak, Tamaz Amiranashvili, Andreas Wagner +7
Physical models in the form of partial differential equations serve as important priors for many under-constrained problems. One such application is tumor treatment planning, which…
MultiOrg: A Multi-rater Organoid-detection Dataset
Christina Bukas, Harshavardhan Subramanian, Fenja See +8
High-throughput image analysis in the biomedical domain has gained significant attention in recent years, driving advancements in drug discovery, disease prediction, and personaliz…
Neural Network Surrogate and Projected Gradient Descent for Fast and Reliable Finite Element Model Calibration: a Case Study on an Intervertebral Disc
Matan Atad, Gabriel Gruber, Marx Ribeiro +7
Accurate calibration of finite element (FE) models is essential across various biomechanical applications, including human intervertebral discs (IVDs), to ensure their reliability…
BraTS-PEDs: Results of the Multi-Consortium International Pediatric Brain Tumor Segmentation Challenge 2023
Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu +77
Pediatric central nervous system tumors are the leading cause of cancer-related deaths in children. The five-year survival rate for high-grade glioma in children is less than 20%.…
QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge
Hongwei Bran Li, Fernando Navarro, Ivan Ezhov +77
Uncertainty in medical image segmentation tasks, especially inter-rater variability, arising from differences in interpretations and annotations by various experts, presents a sign…
Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge
Dominic LaBella, Ujjwal Baid, Omaditya Khanna +119
We describe the design and results from the BraTS 2023 Intracranial Meningioma Segmentation Challenge. The BraTS Meningioma Challenge differed from prior BraTS Glioma challenges in…
A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge
Ezequiel de la Rosa, Mauricio Reyes, Sook-Lei Liew +55
Diffusion-weighted MRI (DWI) is essential for stroke diagnosis, treatment decisions, and prognosis. However, image and disease variability hinder the development of generalizable A…
The Brain Tumor Segmentation in Pediatrics (BraTS-PEDs) Challenge: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs)
Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu +68
Pediatric tumors of the central nervous system are the most common cause of cancer-related death in children. The five-year survival rate for high-grade gliomas in children is less…
Cross-domain and Cross-dimension Learning for Image-to-Graph Transformers
Alexander H. Berger, Laurin Lux, Suprosanna Shit +5
Direct image-to-graph transformation is a challenging task that involves solving object detection and relationship prediction in a single model. Due to this task's complexity, larg…
A Learnable Prior Improves Inverse Tumor Growth Modeling
Jonas Weidner, Ivan Ezhov, Michal Balcerak +11
Biophysical modeling, particularly involving partial differential equations (PDEs), offers significant potential for tailoring disease treatment protocols to individual patients. H…
Panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps
Florian Kofler, Hendrik Möller, Josef A. Buchner +18
This paper introduces panoptica, a versatile and performance-optimized package designed for computing instance-wise segmentation quality metrics from 2D and 3D segmentation maps. p…
The TopCoW Challenge -- Topology-Aware Circle of Willis Segmentation for CT and MR Angiography
Kaiyuan Yang, Fabio Musio, Yihui Ma +112
The Circle of Willis (CoW) is an important network of arteries connecting major circulations of the brain. Its vascular architecture is believed to influence the risk, severity, an…
Individualizing Glioma Radiotherapy Planning by Optimization of Data and Physics-Informed Discrete Loss
Michal Balcerak, Jonas Weidner, Petr Karnakov +8
Brain tumor growth is unique to each glioma patient and extends beyond what is visible in imaging scans, infiltrating surrounding brain tissue. Understanding these hidden patient-s…
Personalized Predictions of Glioblastoma Infiltration: Mathematical Models, Physics-Informed Neural Networks and Multimodal Scans
Ray Zirui Zhang, Ivan Ezhov, Michal Balcerak +4
Predicting the infiltration of Glioblastoma (GBM) from medical MRI scans is crucial for understanding tumor growth dynamics and designing personalized radiotherapy treatment plans.…