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19942025
most citedDirect-coupling analysis of residue co-evolution captures native contacts across many protein families

1.6k citations · 4.7k across the 34 of their papers we have counts for

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q-bio.CB2022★ 16 cited

Stochastic fluctuations promote ordered pattern formation of cells in the Notch-Delta signaling pathway

Madeline Galbraith, Federico Bocci, José N. Onuchic

The Notch-Delta signaling pathway mediates cell differentiation implicated in many regulatory processes including spatiotemporal patterning in tissues by promoting alternate cell f…

q-bio.CB2020★ 3 cited

Towards decoding the coupled decision-making of metabolism and epithelial-mesenchymal transition in cancer

Dongya Jia, Jun Hyoung Park, Harsimran Kaur +9

Cancer cells have the plasticity to adjust their metabolic phenotypes for survival and metastasis. During metastasis, a developmental program known as the epithelial-mesenchymal tr…

q-bio.CB2019★ 2 cited

Quantifying cancer epithelial-mesenchymal plasticity and its association with stemness and immune response

Dongya Jia, Xuefei Li, Federico Bocci +5

Cancer cells can acquire a spectrum of stable hybrid epithelial/mesenchymal (E/M) states during epithelial-mesenchymal transition (EMT). Cells in these hybrid E/M phenotypes often…

q-bio.CB2017

Distinguishing Mechanisms Underlying EMT Tristability

Dongya Jia, Mohit Kumar Jolly, Satyendra C. Tripathi +10

Background: The Epithelial-Mesenchymal Transition (EMT) endows epithelial-looking cells with enhanced migratory ability during embryonic development and tissue repair. EMT can also…

q-bio.CB2015★ 205 cited

Implications of the hybrid epithelial/mesenchymal phenotype in metastasis

Mohit Kumar Jolly, Marcelo Boareto, Bin Huang +5

Understanding cell-fate decisions during tumorigenesis and metastasis is a major challenge in modern cancer biology. One canonical cell-fate decision that cancer cells undergo is E…