5 citations · 5 across the 2 of their papers we have counts for
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cs.DC2021
Accelerating key bioinformatics tasks 100-fold by improving memory access
Igor Sfiligoi, Daniel McDonald, Rob Knight
Most experimental sciences now rely on computing, and biological sciences are no exception. As datasets get bigger, so do the computing costs, making proper optimization of the cod…
cs.DC2020★ 5 cited
Porting and optimizing UniFrac for GPUs
Igor Sfiligoi, Daniel McDonald, Rob Knight
UniFrac is a commonly used metric in microbiome research for comparing microbiome profiles to one another ("beta diversity"). The recently implemented Striped UniFrac added the cap…