5 citations · 7 across the 4 of their papers we have counts for
4 papers
Testing GitHub projects on custom resources using unprivileged Kubernetes runners
Igor Sfiligoi, Daniel McDonald, Rob Knight +1
GitHub is a popular repository for hosting software projects, both due to ease of use and the seamless integration with its testing environment. Native GitHub Actions make it easy…
Enabling microbiome research on personal devices
Igor Sfiligoi, Daniel McDonald, Rob Knight
Microbiome studies have recently transitioned from experimental designs with a few hundred samples to designs spanning tens of thousands of samples. Modern studies such as the Eart…
Accelerating key bioinformatics tasks 100-fold by improving memory access
Igor Sfiligoi, Daniel McDonald, Rob Knight
Most experimental sciences now rely on computing, and biological sciences are no exception. As datasets get bigger, so do the computing costs, making proper optimization of the cod…
Porting and optimizing UniFrac for GPUs
Igor Sfiligoi, Daniel McDonald, Rob Knight
UniFrac is a commonly used metric in microbiome research for comparing microbiome profiles to one another ("beta diversity"). The recently implemented Striped UniFrac added the cap…