most citedThe effectiveness of position- and composition-specific gap costs for protein similarity searches

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cs.MS2001

Users Guide for SnadiOpt: A Package Adding Automatic Differentiation to Snopt

E. Michael Gertz, Philip E. Gill, Julia Muetherig

SnadiOpt is a package that supports the use of the automatic differentiation package ADIFOR with the optimization package Snopt. Snopt is a general-purpose system for solving optim…