7 citations · 7 across the 2 of their papers we have counts for
2 papers
q-bio.BM2008★ 7 cited
The effectiveness of position- and composition-specific gap costs for protein similarity searches
Aleksandar Stojmirović, E. Michael Gertz, Stephen F. Altschul +1
The flexibility in gap cost enjoyed by Hidden Markov Models (HMMs) is expected to afford them better retrieval accuracy than position-specific scoring matrices (PSSMs). We attempt…
cs.MS2001
Users Guide for SnadiOpt: A Package Adding Automatic Differentiation to Snopt
E. Michael Gertz, Philip E. Gill, Julia Muetherig
SnadiOpt is a package that supports the use of the automatic differentiation package ADIFOR with the optimization package Snopt. Snopt is a general-purpose system for solving optim…