185 citations · 436 across the 4 of their papers we have counts for
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q-bio.GN2014★ 172 cited
Fast and accurate alignment of long bisulfite-seq reads
Brent S. Pedersen, Kenneth Eyring, Subhajyoti De +2
Summary: Longer sequencing reads, with at least 200 bases per template are now common. While traditional aligners have adopted new strategies to improve the mapping of longer reads…
q-bio.GN2013
CruzDB: software for annotation of genomic intervals with UCSC genome-browser data
Brent S Pedersen, Ivana V Yang, Subhajyoti De
The biological significance of genomic features is often context-dependent. We present CruzDB, a fast and intuitive programmatic interface to the UCSC genome browser that facilitat…