185 citations · 436 across the 4 of their papers we have counts for
4 papers
Weakly Supervised Deep Nuclei Segmentation Using Partial Points Annotation in Histopathology Images
Hui Qu, Pengxiang Wu, Qiaoying Huang +7
Nuclei segmentation is a fundamental task in histopathology image analysis. Typically, such segmentation tasks require significant effort to manually generate accurate pixel-wise a…
Understanding the role of phenotypic switching in cancer drug resistance
Einar Bjarki Gunnarsson, Subhajyoti De, Kevin Leder +1
The emergence of acquired drug resistance in cancer represents a major barrier to treatment success. While research has traditionally focused on genetic sources of resistance, rece…
Fast and accurate alignment of long bisulfite-seq reads
Brent S. Pedersen, Kenneth Eyring, Subhajyoti De +2
Summary: Longer sequencing reads, with at least 200 bases per template are now common. While traditional aligners have adopted new strategies to improve the mapping of longer reads…
CruzDB: software for annotation of genomic intervals with UCSC genome-browser data
Brent S Pedersen, Ivana V Yang, Subhajyoti De
The biological significance of genomic features is often context-dependent. We present CruzDB, a fast and intuitive programmatic interface to the UCSC genome browser that facilitat…