27 citations · 76 across the 9 of their papers we have counts for
4 papers · 1 filter
A dynamical system model for predicting gene expression from the epigenome
James Brunner, Jacob Kim, Timothy Downing +2
Gene regulation is an important fundamental biological process. The regulation of gene expression is managed through a variety of methods including epigenetic processes (e.g., DNA…
Confidence in the dynamic spread of epidemics under biased sampling conditions
James D. Brunner, Nicholas Chia
The interpretation of sampling data plays a crucial role in policy response to the spread of a disease during an epidemic, such as the COVID-19 epidemic of 2020. However, this is a…
On classes of reaction networks and their associated polynomial dynamical systems
David F. Anderson, James D. Brunner, Gheorghe Craciun +1
In the study of reaction networks and the polynomial dynamical systems that they generate, special classes of networks with important properties have been identified. These include…
Minimizing the number of optimizations for efficient community dynamic flux balance analysis
James D. Brunner, Nicholas Chia
Dynamic flux balance analysis uses a quasi-steady state assumption to calculate an organism's metabolic activity at each time-step of a dynamic simulation, using the well-known tec…