81 citations · 109 across the 9 of their papers we have counts for
10 papers
GenPairX: A Hardware-Algorithm Co-Designed Accelerator for Paired-End Read Mapping
Julien Eudine, Chu Li, Zhuo Cheng +11
Genome sequencing has become a central focus in computational biology. A genome study typically begins with sequencing, which produces millions to billions of short DNA fragments k…
SAGe: A Lightweight Algorithm-Architecture Co-Design for Mitigating the Data Preparation Bottleneck in Large-Scale Genome Sequence Analysis
Nika Mansouri Ghiasi, Talu Güloglu, Harun Mustafa +8
Genome sequence analysis, which examines the DNA sequences of organisms, drives advances in many critical medical and biotechnological fields. Given its importance and the exponent…
Ariadne: A Hotness-Aware and Size-Adaptive Compressed Swap Technique for Fast Application Relaunch and Reduced CPU Usage on Mobile Devices
Yu Liang, Aofeng Shen, Chun Jason Xue +9
Growing application memory demands and concurrent usage are making mobile device memory scarce. When memory pressure is high, current mobile systems use a RAM-based compressed swap…
MetaStore: High-Performance Metagenomic Analysis via In-Storage Computing
Nika Mansouri Ghiasi, Mohammad Sadrosadati, Harun Mustafa +9
Metagenomics has led to significant advancements in many fields. Metagenomic analysis commonly involves the key tasks of determining the species present in a sample and their relat…
TuRaN: True Random Number Generation Using Supply Voltage Underscaling in SRAMs
İsmail Emir Yüksel, Ataberk Olgun, Behzad Salami +6
Prior works propose SRAM-based TRNGs that extract entropy from SRAM arrays. SRAM arrays are widely used in a majority of specialized or general-purpose chips that perform the compu…
Scrooge: A Fast and Memory-Frugal Genomic Sequence Aligner for CPUs, GPUs, and ASICs
Joël Lindegger, Damla Senol Cali, Mohammed Alser +3
Pairwise sequence alignment is a very time-consuming step in common bioinformatics pipelines. Speeding up this step requires heuristics, efficient implementations, and/or hardware…