activity
20202023
most citedSumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization

193 citations · 626 across the 27 of their papers we have counts for

collaborators

27 papers

cs.CL2023★ 3 cited

At Which Training Stage Does Code Data Help LLMs Reasoning?

Yingwei Ma, Yue Liu, Yue Yu +4

Large Language Models (LLMs) have exhibited remarkable reasoning capabilities and become the foundation of language technologies. Inspired by the great success of code data in trai…

cs.LG2023★ 6 cited

Provable Training for Graph Contrastive Learning

Yue Yu, Xiao Wang, Mengmei Zhang +2

Graph Contrastive Learning (GCL) has emerged as a popular training approach for learning node embeddings from augmented graphs without labels. Despite the key principle that maximi…

cs.CL2023★ 39 cited

ToolQA: A Dataset for LLM Question Answering with External Tools

Yuchen Zhuang, Yue Yu, Kuan Wang +2

Large Language Models (LLMs) have demonstrated impressive performance in various NLP tasks, but they still suffer from challenges such as hallucination and weak numerical reasoning…

cs.CL2023★ 10 cited

DyGen: Learning from Noisy Labels via Dynamics-Enhanced Generative Modeling

Yuchen Zhuang, Yue Yu, Lingkai Kong +2

Learning from noisy labels is a challenge that arises in many real-world applications where training data can contain incorrect or corrupted labels. When fine-tuning language model…

cs.LG2023★ 4 cited

Local Boosting for Weakly-Supervised Learning

Rongzhi Zhang, Yue Yu, Jiaming Shen +2

Boosting is a commonly used technique to enhance the performance of a set of base models by combining them into a strong ensemble model. Though widely adopted, boosting is typicall…

cs.CL2023★ 72 cited

Large Language Model as Attributed Training Data Generator: A Tale of Diversity and Bias

Yue Yu, Yuchen Zhuang, Jieyu Zhang +5

Large language models (LLMs) have been recently leveraged as training data generators for various natural language processing (NLP) tasks. While previous research has explored diff…

physics.chem-ph2023★ 3 cited

MUBen: Benchmarking the Uncertainty of Molecular Representation Models

Yinghao Li, Lingkai Kong, Yuanqi Du +4

Large molecular representation models pre-trained on massive unlabeled data have shown great success in predicting molecular properties. However, these models may tend to overfit t…

cs.CL2023★ 2 cited

ReGen: Zero-Shot Text Classification via Training Data Generation with Progressive Dense Retrieval

Yue Yu, Yuchen Zhuang, Rongzhi Zhang +3

With the development of large language models (LLMs), zero-shot learning has attracted much attention for various NLP tasks. Different from prior works that generate training data…

cs.LG2023★ 5 cited

Domain Agnostic Fourier Neural Operators

Ning Liu, Siavash Jafarzadeh, Yue Yu

Fourier neural operators (FNOs) can learn highly nonlinear mappings between function spaces, and have recently become a popular tool for learning responses of complex physical syst…

cs.LG2023

Neighborhood-Regularized Self-Training for Learning with Few Labels

Ran Xu, Yue Yu, Hejie Cui +5

Training deep neural networks (DNNs) with limited supervision has been a popular research topic as it can significantly alleviate the annotation burden. Self-training has been succ…

cs.LG2022★ 1 cited

EDoG: Adversarial Edge Detection For Graph Neural Networks

Xiaojun Xu, Yue Yu, Hanzhang Wang +3

Graph Neural Networks (GNNs) have been widely applied to different tasks such as bioinformatics, drug design, and social networks. However, recent studies have shown that GNNs are…

cs.CL2022★ 11 cited

COCO-DR: Combating Distribution Shifts in Zero-Shot Dense Retrieval with Contrastive and Distributionally Robust Learning

Yue Yu, Chenyan Xiong, Si Sun +2

We present a new zero-shot dense retrieval (ZeroDR) method, COCO-DR, to improve the generalization ability of dense retrieval by combating the distribution shifts between source tr…

q-bio.NC2022★ 5 cited

Learning Task-Aware Effective Brain Connectivity for fMRI Analysis with Graph Neural Networks

Yue Yu, Xuan Kan, Hejie Cui +9

Functional magnetic resonance imaging (fMRI) has become one of the most common imaging modalities for brain function analysis. Recently, graph neural networks (GNN) have been adopt…

cs.CL2022

Reduce Catastrophic Forgetting of Dense Retrieval Training with Teleportation Negatives

Si Sun, Chenyan Xiong, Yue Yu +3

In this paper, we investigate the instability in the standard dense retrieval training, which iterates between model training and hard negative selection using the being-trained mo…

cs.CL2022

ReSel: N-ary Relation Extraction from Scientific Text and Tables by Learning to Retrieve and Select

Yuchen Zhuang, Yinghao Li, Jerry Junyang Cheung +5

We study the problem of extracting N-ary relation tuples from scientific articles. This task is challenging because the target knowledge tuples can reside in multiple parts and mod…

cs.CL2022★ 2 cited

PRBoost: Prompt-Based Rule Discovery and Boosting for Interactive Weakly-Supervised Learning

Rongzhi Zhang, Yue Yu, Pranav Shetty +2

Weakly-supervised learning (WSL) has shown promising results in addressing label scarcity on many NLP tasks, but manually designing a comprehensive, high-quality labeling rule set…

cs.LG2022★ 40 cited

A Survey on Programmatic Weak Supervision

Jieyu Zhang, Cheng-Yu Hsieh, Yue Yu +2

Labeling training data has become one of the major roadblocks to using machine learning. Among various weak supervision paradigms, programmatic weak supervision (PWS) has achieved…

cs.LG2022

Multi-task Joint Strategies of Self-supervised Representation Learning on Biomedical Networks for Drug Discovery

Xiaoqi Wang, Yingjie Cheng, Yaning Yang +3

Self-supervised representation learning (SSL) on biomedical networks provides new opportunities for drug discovery. However, how to effectively combine multiple SSL models is still…

cs.CL2021★ 2 cited

AcTune: Uncertainty-aware Active Self-Training for Semi-Supervised Active Learning with Pretrained Language Models

Yue Yu, Lingkai Kong, Jieyu Zhang +2

While pre-trained language model (PLM) fine-tuning has achieved strong performance in many NLP tasks, the fine-tuning stage can be still demanding in labeled data. Recent works hav…

cs.LG2021★ 39 cited

WRENCH: A Comprehensive Benchmark for Weak Supervision

Jieyu Zhang, Yue Yu, Yinghao Li +4

Recent Weak Supervision (WS) approaches have had widespread success in easing the bottleneck of labeling training data for machine learning by synthesizing labels from multiple pot…

cs.CL2021★ 2 cited

Self-Training with Differentiable Teacher

Simiao Zuo, Yue Yu, Chen Liang +5

Self-training achieves enormous success in various semi-supervised and weakly-supervised learning tasks. The method can be interpreted as a teacher-student framework, where the tea…

cs.CL2020★ 6 cited

SeqMix: Augmenting Active Sequence Labeling via Sequence Mixup

Rongzhi Zhang, Yue Yu, Chao Zhang

Active learning is an important technique for low-resource sequence labeling tasks. However, current active sequence labeling methods use the queried samples alone in each iteratio…

cs.CL2020★ 5 cited

Fine-Tuning Pre-trained Language Model with Weak Supervision: A Contrastive-Regularized Self-Training Approach

Yue Yu, Simiao Zuo, Haoming Jiang +3

Fine-tuned pre-trained language models (LMs) have achieved enormous success in many natural language processing (NLP) tasks, but they still require excessive labeled data in the fi…

cs.LG2020★ 193 cited

SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization

Yue Yu, Kexin Huang, Chao Zhang +3

Thanks to the increasing availability of drug-drug interactions (DDI) datasets and large biomedical knowledge graphs (KGs), accurate detection of adverse DDI using machine learning…