activity
19992014
most citedLinear-Time Algorithms for Computing Maximum-Density Sequence Segments with Bioinformatics Applications

49 citations · 74 across the 40 of their papers we have counts for

collaborators

40 papers

cs.DM2014★ 1 cited

A manually-checkable proof for the NP-hardness of 11-color pattern self-assembly tile set synthesis

Aleck Johnsen, Ming-Yang Kao, Shinnosuke Seki

Patterned self-assembly tile set synthesis (PATS) aims at finding a minimum tile set to uniquely self-assemble a given rectangular (color) pattern. For k >= 1, k-PATS is a variant…

cs.CC2014

Computing Minimum Tile Sets to Self-Assemble Colors Patterns

Aleck C. Johnsen, Ming-Yang Kao, Shinnosuke Seki

Patterned self-assembly tile set synthesis (PATS) aims at finding a minimum tile set to uniquely self-assemble a given rectangular color pattern. For , -PATS is a varia…

cs.DS2012

Optimizing Tile Concentrations to Minimize Errors and Time for DNA Tile Self-Assembly Systems

Ho-Lin Chen, Ming-Yang Kao

DNA tile self-assembly has emerged as a rich and promising primitive for nano-technology. This paper studies the problems of minimizing assembly time and error rate by changing the…

cs.DS2012

Deterministic Polynomial-Time Algorithms for Designing Short DNA Words

Ming-Yang Kao, Henry C. M. Leung, He Sun +1

Designing short DNA words is a problem of constructing a set (i.e., code) of n DNA strings (i.e., words) with the minimum length such that the Hamming distance between each pair of…

cs.CC2011★ 9 cited

On Approximating Four Covering and Packing Problems

Mary Ashley, Tanya Berger-Wolf, Piotr Berman +3

In this paper, we consider approximability issues of the following four problems: triangle packing, full sibling reconstruction, maximum profit coverage and 2-coverage. All of them…

cs.CC2006

Reducing Tile Complexity for Self-Assembly Through Temperature Programming

Ming-Yang Kao, Robert Schweller

We consider the tile self-assembly model and how tile complexity can be eliminated by permitting the temperature of the self-assembly system to be adjusted throughout the assembly…