31 citations · 67 across the 8 of their papers we have counts for
4 papers · 1 filter
RNAglib: A Python Package for RNA 2.5D Graphs
Vincent Mallet, Carlos Oliver, Jonathan Broadbent +2
RNA 3D architectures are stabilized by sophisticated networks of (non-canonical) base pair interactions, which can be conveniently encoded as multi-relational graphs and efficientl…
Leveraging binding-site structure for drug discovery with point-cloud methods
Vincent Mallet, Carlos G. Oliver, Nicolas Moitessier +1
Computational drug discovery strategies can be broadly placed in two categories: ligand-based methods which identify novel molecules by similarity with known ligands, and structure…
Using structural and evolutionary information to detect and correct pyrosequencing errors in non-coding RNAs
Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl
Analysis of the sequence-structure relationship in RNA molecules are essential to evolutionary studies but also to concrete applications such as error-correction methodologies in s…
Flexible RNA design under structure and sequence constraints using formal languages
Yu Zhou, Yann Ponty, Stéphane Vialette +3
The problem of RNA secondary structure design (also called inverse folding) is the following: given a target secondary structure, one aims to create a sequence that folds into, or…