13 citations · 31 across the 4 of their papers we have counts for
5 papers
3D-based RNA function prediction tools in rnaglib
Carlos Oliver, Vincent Mallet, Jérôme Waldispühl
Understanding the connection between complex structural features of RNA and biological function is a fundamental challenge in evolutionary studies and in RNA design. However, build…
RNAglib: A Python Package for RNA 2.5D Graphs
Vincent Mallet, Carlos Oliver, Jonathan Broadbent +2
RNA 3D architectures are stabilized by sophisticated networks of (non-canonical) base pair interactions, which can be conveniently encoded as multi-relational graphs and efficientl…
VeRNAl: Mining RNA Structures for Fuzzy Base Pairing Network Motifs
Carlos Oliver, Vincent Mallet, Pericles Philippopoulos +2
RNA 3D motifs are recurrent substructures, modelled as networks of base pair interactions, which are crucial for understanding structure-function relationships. The task of automat…
Leveraging binding-site structure for drug discovery with point-cloud methods
Vincent Mallet, Carlos G. Oliver, Nicolas Moitessier +1
Computational drug discovery strategies can be broadly placed in two categories: ligand-based methods which identify novel molecules by similarity with known ligands, and structure…
10 simple rules to create a serious game, illustrated with examples from structural biology
Marc Baaden, Olivier Delalande, Nicolas Ferey +3
Serious scientific games are games whose purpose is not only fun. In the field of science, the serious goals include crucial activities for scientists: outreach, teaching and resea…