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q-bio.PE2008
Parametric k-best alignment
Peter Huggins, Ruriko Yoshida
Optimal sequence alignments depend heavily on alignment scoring parameters. Given input sequences, {\em parametric alignment} is the well-studied problem that asks for all possible…
q-bio.PE2008★ 4 cited
First steps toward the geometry of cophylogeny
Peter Huggins, Megan Owen, Ruriko Yoshida
Here we introduce researchers in algebraic biology to the exciting new field of cophylogenetics. Cophylogenetics is the study of concomitantly evolving organisms (or genes), such a…