234 citations · 831 across the 17 of their papers we have counts for
17 papers
Probing the Mechanisms of Fibril Formation Using Lattice Models
Mai Suan Li, D. K. Klimov, J. E. Straub +1
Using exhaustive Monte Carlo simulations we study the kinetics and mechanism of fibril formation using lattice models as a function of temperature and the number of chains. While t…
Mapping the energy landscape of biomolecules using single molecule force correlation spectroscopy (FCS): Theory and applications
V. Barsegov, D. Klimov, D. Thirumalai
In the current AFM experiments the distribution of unfolding times, P(t), is measured by applying a constant stretching force f_s from which the apparent unfolding rate is obtained…
Finite size effects on calorimetric cooperativity of two-state proteins
Mai Suan Li, D. K. Klimov, D. Thirumalai
Finite size effects on the calorimetric cooperatity of the folding-unfolding transition in two-state proteins are considered using the Go lattice models with and without side chain…
Finite size effects on thermal denaturation of globular proteins
Mai Suan Li, D. K. Klimov, D. Thirumalai
Finite size effects on the cooperative thermal denaturation of proteins are considered. A dimensionless measure of cooperativity, Omega, scales as N^zeta, where N is the number of…
Thermal denaturation and folding rates of single domain proteins: size matters
Mai Suan Li, D. K. Klimov, D. Thirumalai
We analyze the dependence of thermal denaturation transition and folding rates of globular proteins on the number of amino acid residues, N. Using lattice Go models we show that De…
Folding in lattice models with side chains
Mai Suan Li, D. K. Klimov, D. Thirumalai
The folding kinetics of three-dimensional lattice Go models with side chains is studied using two different Monte Carlo move sets. A flexible move set based on single, double and t…