8 citations · 10 across the 4 of their papers we have counts for
6 papers · 1 filter
Cross-Domain Acceleration of Open Modification Search: From Commodity Platforms to Emerging Memory and Storage Devices
Sumukh Pinge, Chang Eun Song, Po-Kai Hsu +10
Open modification search (OMS) in mass spectrometry (MS) is a data-intensive workload whose performance is dominantly limited by reference data movement rather than computation. Pr…
D-NOVA: In-Storage Retrieval Accelerator via Dual-Bound 3D NAND-Optimized Similarity Search with Vector Adaptation
Chang Eun Song, Sumukh Pinge, Tianqi Zhang +3
Retrieval-Augmented Generation (RAG) enhances the factual grounding of large language model (LLM) inference by retrieving relevant information from external knowledge bases. Howeve…
Proxima: Near-storage Acceleration for Graph-based Approximate Nearest Neighbor Search in 3D NAND
Weihong Xu, Junwei Chen, Po-Kai Hsu +5
Approximate nearest neighbor search (ANNS) plays an indispensable role in a wide variety of applications, including recommendation systems, information retrieval, and semantic sear…
HDDB: Efficient In-Storage SQL Database Search Using Hyperdimensional Computing on Ferroelectric NAND Flash
Quanling Zhao, Yanru Chen, Runyang Tian +6
Hyperdimensional Computing (HDC) encodes information and data into high-dimensional distributed vectors that can be manipulated using simple bitwise operations and similarity searc…
FeNOMS: Enhancing Open Modification Spectral Library Search with In-Storage Processing on Ferroelectric NAND (FeNAND) Flash
Sumukh Pinge, Ashkan Moradifirouzabadi, Keming Fan +29
The rapid expansion of mass spectrometry (MS) data, now exceeding hundreds of terabytes, poses significant challenges for efficient, large-scale library search - a critical compone…
Efficient Open Modification Spectral Library Searching in High-Dimensional Space with Multi-Level-Cell Memory
Keming Fan, Wei-Chen Chen, Sumukh Pinge +2
Open Modification Search (OMS) is a promising algorithm for mass spectrometry analysis that enables the discovery of modified peptides. However, OMS encounters challenges as it exp…