8 papers
Cross-Domain Acceleration of Open Modification Search: From Commodity Platforms to Emerging Memory and Storage Devices
Sumukh Pinge, Chang Eun Song, Po-Kai Hsu +10
Open modification search (OMS) in mass spectrometry (MS) is a data-intensive workload whose performance is dominantly limited by reference data movement rather than computation. Pr…
D-NOVA: In-Storage Retrieval Accelerator via Dual-Bound 3D NAND-Optimized Similarity Search with Vector Adaptation
Chang Eun Song, Sumukh Pinge, Tianqi Zhang +3
Retrieval-Augmented Generation (RAG) enhances the factual grounding of large language model (LLM) inference by retrieving relevant information from external knowledge bases. Howeve…
Proxima: Near-storage Acceleration for Graph-based Approximate Nearest Neighbor Search in 3D NAND
Weihong Xu, Junwei Chen, Po-Kai Hsu +5
Approximate nearest neighbor search (ANNS) plays an indispensable role in a wide variety of applications, including recommendation systems, information retrieval, and semantic sear…
HD-Bind: Encoding of Molecular Structure with Low Precision, Hyperdimensional Binary Representations
Derek Jones, Jonathan E. Allen, Xiaohua Zhang +5
Publicly available collections of drug-like molecules have grown to comprise 10s of billions of possibilities in recent history due to advances in chemical synthesis. Traditional m…
HDDB: Efficient In-Storage SQL Database Search Using Hyperdimensional Computing on Ferroelectric NAND Flash
Quanling Zhao, Yanru Chen, Runyang Tian +6
Hyperdimensional Computing (HDC) encodes information and data into high-dimensional distributed vectors that can be manipulated using simple bitwise operations and similarity searc…
HERP: Hardware for Energy Efficient and Realtime DB Search and Cluster Expansion in Proteomics
Md Mizanur Rahaman Nayan, Zheyu Li, Flavio Ponzina +3
Database search and clustering are fundamental components of many data analytics problems, such as mass spectrometry-driven proteomics. Traditional full clustering and search algor…